View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_high_8 (Length: 658)

Name: NF11703_high_8
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_high_8
NF11703_high_8
[»] chr1 (5 HSPs)
chr1 (20-410)||(44575966-44576347)
chr1 (416-651)||(44576397-44576632)
chr1 (172-226)||(48326831-48326886)
chr1 (289-342)||(44996666-44996719)
chr1 (214-266)||(51582066-51582118)
[»] chr7 (1 HSPs)
chr7 (172-346)||(19261903-19262073)
[»] chr3 (2 HSPs)
chr3 (165-269)||(37237004-37237109)
chr3 (165-249)||(54996737-54996822)
[»] chr8 (4 HSPs)
chr8 (165-340)||(38198104-38198281)
chr8 (165-214)||(11521560-11521609)
chr8 (165-269)||(30581865-30581972)
chr8 (165-212)||(11521644-11521691)
[»] chr4 (3 HSPs)
chr4 (241-344)||(49936166-49936268)
chr4 (165-256)||(54761047-54761139)
chr4 (167-213)||(11842449-11842495)
[»] chr2 (1 HSPs)
chr2 (165-213)||(44966754-44966802)
[»] chr5 (2 HSPs)
chr5 (297-346)||(20409665-20409714)
chr5 (241-316)||(10650464-10650539)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 44575966 - 44576347
Alignment:
Q  20 ataagccagtgtcttcattgtaaaatatatgtcagacttatttctggtaccaaatgcatggactgttctacggnnnnnnnttcctcaataacacaaacta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||| |||||    
T  44575966 ataagccagtgtcttcattgtaaaatatatgtcagacttatttctggtaccaaatgcatgtactgttctacg-aaaaaaattcctcaataacacgaacta 44576064  T
Q  120 ttagggtctatttgggagggagtttgaactattctggtaccaatagctaagcctatattttgaaatatatttgatatttttataaaattgaaatacatgg 219  Q
    |||||||||||||||||||||| ||         |||     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44576065 ttagggtctatttgggagggaggttt--------tggagaggagagctaagcctatattttgaaatatatttgatatttttataaaattgaaatacatgg 44576156  T
Q  220 taaatgaccatatactacattaatcacactgaatttatttttaaaaacatgtcataagtgtccgtaatataaaaaacaaaagcaagtcctcccctcctct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44576157 taaatgaccatatactacattaatcacactgaatttatttttaaaaacatgtcataagtgtccgtaatataaaaaacaaaagcaagtcctcccctcctct 44576256  T
Q  320 tcaaaaccctccgtccaaacatacccttaatggagccaaaattataacataatagtgaaaagtttaggataaaagttattatggatccttc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44576257 tcaaaaccctccgtccaaacatacccttaatggagccaaaattataacataatagtgaaaagtttaggataaaagttattatggatccttc 44576347  T

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Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 416 - 651
Target Start/End: Original strand, 44576397 - 44576632
Alignment:
Q  416 caaactagtattgaattcataaaaactagaatgaattcctctgtttatagtactgacctgcaggacatcaaggattgcacctcccaatgccaaatggccc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44576397 caaactagtattgaattcataaaaactagaatgaattcctctgtttatagtactgacctgcaggacatcaaggattgcacctcccaatgccaaatggccc 44576496  T
Q  516 gaattctcacaaaatgacttgaaacccttctctcaaccccacctgttatttgccagaaacatgccttattgtaccaaagcctctatcactaaatactagt 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44576497 gaattctcacaaaatgacttgaaacccttctctcaaccccacctgttatttgccagaaacatgccttattgtaccaaagcctctatcactaaatactagt 44576596  T
Q  616 gctcaggagtttgacccttgacgcgtgcctatgctt 651  Q
    ||||| ||||||||||||||||||||||||||||||    
T  44576597 gctcaagagtttgacccttgacgcgtgcctatgctt 44576632  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 48326886 - 48326831
Alignment:
Q  172 ctatattttgaaatatatttgatatttttataaaattgaaat-acatggtaaatga 226  Q
    |||||||||||||||||||||||||||||| ||  ||||||| ||||| |||||||    
T  48326886 ctatattttgaaatatatttgatatttttaaaatgttgaaataacatgataaatga 48326831  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 44996666 - 44996719
Alignment:
Q  289 taaaaaacaaaagcaagtcctcccctcctcttcaaaaccctccgtccaaacata 342  Q
    ||||||| ||||| ||| |||||||||| || ||||||||||| ||||||||||    
T  44996666 taaaaaagaaaagtaagccctcccctcccctccaaaaccctccatccaaacata 44996719  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 51582118 - 51582066
Alignment:
Q  214 acatggtaaatgaccatatactacattaatcacactgaatttatttttaaaaa 266  Q
    ||||| ||||||| ||| || ||| | ||||||||||||||||||||||||||    
T  51582118 acatgataaatgatcatgtaatacttcaatcacactgaatttatttttaaaaa 51582066  T

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Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 172 - 346
Target Start/End: Original strand, 19261903 - 19262073
Alignment:
Q  172 ctatattttgaaatatatttgatatttttataaaattgaaa-tacatggtaaatgaccatatactacattaatcacactgaatttatttttaaaaacatg 270  Q
    ||||||||| |||||||||||||||||||| ||||||||||  ||||| ||||||| |||||| ||| | ||||||| | ||||||||||| |||||||     
T  19261903 ctatattttcaaatatatttgatatttttaaaaaattgaaagaacatgataaatgatcatatagtacttcaatcacaattaatttatttttcaaaacatt 19262002  T
Q  271 tcataagtgtccgtaatataaaaaacaaaagcaagtcctcccctcctcttcaaaaccctccgtccaaacataccct 346  Q
    | | ||| ||| ||||| |||||   ||||| ||| ||||||||||     |||||||||| ||||||||||||||    
T  19262003 tta-aagagtctgtaatttaaaattgaaaagtaagccctcccctcc----aaaaaccctccatccaaacataccct 19262073  T

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Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 37237109 - 37237004
Alignment:
Q  165 gctaagcctatattttgaaatatatttgatatttttataaaattgaaat-acatggtaaatgaccatatactacattaatcacactgaatttatttttaa 263  Q
    |||||| |||||| ||||||||| ||||||||||| | ||||||||||| ||||| ||||||| ||| || ||| | ||||||||| |||||||||| ||    
T  37237109 gctaagtctatatcttgaaatatgtttgatattttaaaaaaattgaaataacatgataaatgatcatttagtacttcaatcacacttaatttattttcaa 37237010  T
Q  264 aaacat 269  Q
    ||||||    
T  37237009 aaacat 37237004  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 54996737 - 54996822
Alignment:
Q  165 gctaagcctatattttgaaatatatttgatatttttataaaattgaaa-tacatggtaaatgaccatatactacattaatcacact 249  Q
    |||||| |||||||||||||||||||||||||||| | ||||||||||  ||||| ||||||| |||||| ||| | |||||||||    
T  54996737 gctaagtctatattttgaaatatatttgatattttaaaaaaattgaaagaacatgataaatgatcatataatacttcaatcacact 54996822  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 340
Target Start/End: Original strand, 38198104 - 38198281
Alignment:
Q  165 gctaagcctatattttgaaatatatttgatatttttataaaattgaaata----catggtaaatgaccatatactacattaatcacactgaatttatttt 260  Q
    |||||| ||||| ||| ||||| || ||||||||||| ||||||||||||    |||| || |||| |||||| ||| | ||||||||| |||| |||||    
T  38198104 gctaagtctatactttaaaatacatctgatattttta-aaaattgaaataacaacatgatatatgatcatataatacttcaatcacacttaattcatttt 38198202  T
Q  261 taaaaacatgtcataagtgtccgtaatataaaaaacaaaagcaagtcctcccctcctcttcaaaaccctccgtccaaaca 340  Q
     |||||||  | ||| ||||| ||||| ||||||  ||||| |||||||||| ||| || ||||||||||| ||||||||    
T  38198203 aaaaaacactttata-gtgtctgtaatttaaaaatgaaaagtaagtcctcccatccactccaaaaccctccatccaaaca 38198281  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 11521560 - 11521609
Alignment:
Q  165 gctaagcctatattttgaaatatatttgatatttttataaaattgaaata 214  Q
    |||||| |||||||||||||| ||||||||||||||| |||||| |||||    
T  11521560 gctaagtctatattttgaaatctatttgatatttttaaaaaattaaaata 11521609  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 30581865 - 30581972
Alignment:
Q  165 gctaagcctatattttgaaatatatttgatatttttataaaattgaaat---acatggtaaatgaccatatactacattaatcacactgaatttattttt 261  Q
    |||||| ||||||||||||||||| |||||||||  |  ||||||||||   ||||| ||||||| |||||| ||| | ||||||||| ||||| ||||     
T  30581865 gctaagtctatattttgaaatataattgatatttaaaagaaattgaaatacaacatgataaatgatcatataatacttcaatcacacttaatttgtttta 30581964  T
Q  262 aaaaacat 269  Q
    ||| ||||    
T  30581965 aaacacat 30581972  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 11521691 - 11521644
Alignment:
Q  165 gctaagcctatattttgaaatatatttgatatttttataaaattgaaa 212  Q
    |||||| |||||||||||||||||||||||||||| | ||| ||||||    
T  11521691 gctaagtctatattttgaaatatatttgatattttaaaaaatttgaaa 11521644  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 49936268 - 49936166
Alignment:
Q  241 aatcacactgaatttatttttaaaaacatgtcata-agtgtccgtaatataaaaaacaaaagcaagtcctcccctcctcttcaaaaccctccgtccaaac 339  Q
    ||||||||| |||| ||||  ||||||||  |||| |||||||||||| ||||||| |||||||||  ||||||||| || | ||||||| | |||||||    
T  49936268 aatcacacttaattgatttaaaaaaacat--catatagtgtccgtaatttaaaaaagaaaagcaagcactcccctcccctcctaaacccttcatccaaac 49936171  T
Q  340 atacc 344  Q
    |||||    
T  49936170 atacc 49936166  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 54761047 - 54761139
Alignment:
Q  165 gctaagcctatattttgaaatatatttgatatttttataaaattgaaata-catggtaaatgaccatatactacattaatcacactgaattta 256  Q
    |||||| ||||||||| ||| ||||| |||||||||  |||||||||| | |||| ||||||| || ||| ||| ||||||||||| ||||||    
T  54761047 gctaagtctatattttaaaacatattagatattttttaaaaattgaaaaaacatgataaatgatcacatagtactttaatcacacttaattta 54761139  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 11842495 - 11842449
Alignment:
Q  167 taagcctatattttgaaatatatttgatatttttataaaattgaaat 213  Q
    |||| ||||||||||||||||  |||||||||||| |||||||||||    
T  11842495 taagtctatattttgaaatattattgatatttttaaaaaattgaaat 11842449  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 44966802 - 44966754
Alignment:
Q  165 gctaagcctatattttgaaatatatttgatatttttataaaattgaaat 213  Q
    |||||| ||||||||||||||||||||||| |||||| ||||| |||||    
T  44966802 gctaagtctatattttgaaatatatttgatgtttttaaaaaatggaaat 44966754  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 20409714 - 20409665
Alignment:
Q  297 aaaagcaagtcctcccctcctcttcaaaaccctccgtccaaacataccct 346  Q
    ||||| ||| |||||||||| || ||||||||||| ||||||||||||||    
T  20409714 aaaagtaagccctcccctcccctccaaaaccctccatccaaacataccct 20409665  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 10650539 - 10650464
Alignment:
Q  241 aatcacactgaatttattttt-aaaaacatgtcataagtgtccgtaatataaaaaacaaaagcaagtcctcccctcc 316  Q
    ||||||||| ||||||||||  |||||||| ||||| ||||||||||| ||||||  ||||| || |||||||||||    
T  10650539 aatcacacttaatttattttagaaaaacatttcata-gtgtccgtaatttaaaaataaaaagtaaatcctcccctcc 10650464  T

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