View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_high_80 (Length: 256)

Name: NF11703_high_80
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_high_80
NF11703_high_80
[»] chr3 (11 HSPs)
chr3 (19-241)||(13003460-13003683)
chr3 (19-241)||(31251903-31252126)
chr3 (19-233)||(31094254-31094472)
chr3 (19-223)||(27205984-27206189)
chr3 (19-116)||(16162748-16162847)
chr3 (23-66)||(25658207-25658250)
chr3 (23-66)||(25664612-25664655)
chr3 (23-66)||(25671017-25671060)
chr3 (23-66)||(25677422-25677465)
chr3 (23-66)||(25684096-25684139)
chr3 (137-233)||(27228714-27228810)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 13003460 - 13003683
Alignment:
Q  19 atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaa-aacaaaagttttgttagtcatatagat 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13003460 atttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacattctgtgaactcataaaaaaacaaaagttttgttagtcatatagat 13003559  T
Q  118 gataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13003560 gataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaaccaatcaa 13003659  T
Q  218 attgcacatttaatgattcctttg 241  Q
    ||||||||| ||||||||||||||    
T  13003660 attgcacatctaatgattcctttg 13003683  T

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Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 31252126 - 31251903
Alignment:
Q  19 atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaaaa-caaaagttttgttagtcatatagat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31252126 atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaaaaacaaaagttttgttagtcatatagat 31252027  T
Q  118 gataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaa 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  31252026 gataaaccatttatatcacacaaaaataacatgtaaggatttaggacaaaaccttctttacttttacataagtcgggttttagcttcttaaaccaatcaa 31251927  T
Q  218 attgcacatttaatgattcctttg 241  Q
    ||||||||||||||||||||||||    
T  31251926 attgcacatttaatgattcctttg 31251903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 31094254 - 31094472
Alignment:
Q  19 atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataa----aaaacaaaagttttgttagtcatata 114  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||    |||| ||||||||||||||||||||     
T  31094254 atttccaccaatctctcccactataaacaacgattttttgaagaagctatcacattctgtgaactcacaagaagaaaaaaaaagttttgttagtcatatt 31094353  T
Q  115 gatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaat 214  Q
    ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||   |||||||||||||| ||||||||    
T  31094354 gatgataaatcatttatatcacacaaaaataacaagcaaggagttaggacaaaaccttctttgtttttacacaataagggttttagcttcttaaaccaat 31094453  T
Q  215 caaattgcacatttaatga 233  Q
    ||||||||||| |||||||    
T  31094454 caaattgcacaattaatga 31094472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 27206189 - 27205984
Alignment:
Q  19 atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataa-aaaacaaaagttttgttagtcatatagat 117  Q
    ||||| ||||||||||||||||| ||||||  | |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| || |     
T  27206189 atttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacac 27206090  T
Q  118 gataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaa 217  Q
    || |||| |||||| ||| |||||||||  ||||| ||| |||||||||||||||||||  |||||||  |   |||||| ||||||| |||||||||||    
T  27206089 gaaaaacaatttatttcaaacaaaaatagtatgcagggagttaggacaaaaccttctttagttttacacgatgagggtttaagcttcttaaaccaatcaa 27205990  T
Q  218 attgca 223  Q
    ||||||    
T  27205989 attgca 27205984  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 16162847 - 16162748
Alignment:
Q  19 atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactc--ataaaaaacaaaagttttgttagtcatataga 116  Q
    |||||||||||| |||||||||||||| |||||   |||||||||||| ||||| ||||| |  ||  | |||||| |||||||||||||||||||||||    
T  16162847 atttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacactctgttatttcaaaaaaaaaaaaaaagttttgttagtcatataga 16162748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25658250 - 25658207
Alignment:
Q  23 ccaccaatctctcccactataaacaatgagtttttgaagaagct 66  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  25658250 ccaccaatctctcccactataaacaatgattttttgaagtagct 25658207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25664655 - 25664612
Alignment:
Q  23 ccaccaatctctcccactataaacaatgagtttttgaagaagct 66  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  25664655 ccaccaatctctcccactataaacaatgattttttgaagtagct 25664612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25671060 - 25671017
Alignment:
Q  23 ccaccaatctctcccactataaacaatgagtttttgaagaagct 66  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  25671060 ccaccaatctctcccactataaacaatgattttttgaagtagct 25671017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25677465 - 25677422
Alignment:
Q  23 ccaccaatctctcccactataaacaatgagtttttgaagaagct 66  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  25677465 ccaccaatctctcccactataaacaatgattttttgaagtagct 25677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25684139 - 25684096
Alignment:
Q  23 ccaccaatctctcccactataaacaatgagtttttgaagaagct 66  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  25684139 ccaccaatctctcccactataaacaatgattttttgaagtagct 25684096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 27228810 - 27228714
Alignment:
Q  137 acaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaaattgcacatttaatga 233  Q
    |||||||||| | ||||| | ||| ||||||||||||||  |||||||| ||    |||||||  |||| |||||| ||||||||||||||||||||    
T  27228810 acaaaaataatacgcaagtagttatgacaaaaccttcttcacttttacacaatgatggttttatattcttaaaccattcaaattgcacatttaatga 27228714  T

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