View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_high_82 (Length: 253)
Name: NF11703_high_82
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_82 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 25889825 - 25889926
Alignment:
| Q |
136 |
atacaaaagcttcgatcaaaggtttagaagttcaaatcggacaaatctccaagcaacttgatgtcaaccagacaaaacccttcaatgttaatacgaaaga |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25889825 |
atacaaaagcttcgatcaaaggtttagaagttcaaatcggacaaatctccaagcaacttgatgccaaccagacaaaacccttcaatgttaatacgaaaga |
25889924 |
T |
|
| Q |
236 |
ta |
237 |
Q |
| |
|
|| |
|
|
| T |
25889925 |
ta |
25889926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 25889774 - 25889830
Alignment:
| Q |
14 |
agaaggctggtatacaagaaaaatgatactagtctctataatcaccctactatacaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25889774 |
agaaggctggtatacaagaaaaatgatactagtctctataatcaccctactatacaa |
25889830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University