View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_85 (Length: 250)
Name: NF11703_high_85
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_85 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7131973 - 7131733
Alignment:
| Q |
1 |
ctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataac |
100 |
Q |
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| T |
7131973 |
ctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataac |
7131874 |
T |
|
| Q |
101 |
catcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7131873 |
catcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaag |
7131774 |
T |
|
| Q |
201 |
ttcttgaatatcattttcagatataatttcttttcctttgc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7131773 |
ttcttgaatatcattttcagatataatttcttttcctttgc |
7131733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 7154467 - 7154283
Alignment:
| Q |
1 |
ctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataac |
100 |
Q |
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|
||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| |||| ||||| |||||||| ||||||||||| ||||||| |
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| T |
7154467 |
ctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataac |
7154368 |
T |
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| Q |
101 |
catcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaa |
185 |
Q |
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| T |
7154367 |
catctatgatggtcaattcagtgcattctctagggaccaataaaggtgaaggtgggtgtaacctcattgtttctttgatcactaa |
7154283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7141697 - 7141508
Alignment:
| Q |
1 |
ctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||||| ||| | || ||||| |||| || | |||| |||| ||||||||||||||||| | |
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| T |
7141697 |
ctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacc |
7141598 |
T |
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| Q |
101 |
catcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaatttta |
190 |
Q |
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|||| || ||||||| ||| |||| ||| || | || ||||||| ||||| ||||||||| || || ||||| |||||||| |||| |
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| T |
7141597 |
catctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatcactaacttta |
7141508 |
T |
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