View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_89 (Length: 248)
Name: NF11703_high_89
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20338582 - 20338821
Alignment:
| Q |
1 |
aggtggtgtattttgttccgaatacaataaatgtcagtgttttcagtttgcagcataatagttggagaaatattcaaaattctccagtgactcatgatta |
100 |
Q |
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| T |
20338582 |
aggtggtgtattttgttccgaatacaataaatgtcagtgttttcaatttgcagcataatagttggagaaatattcaaaattctcctgtgactcatgatta |
20338681 |
T |
|
| Q |
101 |
ctccatgaatgctgtgcatctgagtggctgtattagttggttggcaattcgcaattactctgctccttataattgcgagaatattgctgttcagcagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
20338682 |
ctccatgaatgctgtgcatctgagtggctgtattagttggttggcaattcgcaattactctgctccttataattgcgagaatattactgttcagcaattt |
20338781 |
T |
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| Q |
201 |
gtgattatatctattgacttgagcactgagacacattctc |
240 |
Q |
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| T |
20338782 |
gtgattatatctattgacttgagcactgagacacattctc |
20338821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 20126496 - 20126354
Alignment:
| Q |
105 |
atgaatgctgtgcatctgagtggctgtattagttggttggcaattcgcaattactctgctccttataattgcgagaatattgctgttcagcagtttgtga |
204 |
Q |
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| T |
20126496 |
atgaatgttgtgcatctgagtggctgtattagttggttggcaatttgcaattactctgctccttatgattgcaagaatatcactattcagcaatttgtga |
20126397 |
T |
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| Q |
205 |
ttatatctattgacttgagcactgagacacattctctgcttct |
247 |
Q |
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| T |
20126396 |
ttatttcccttgacttgggcactgagacacattctcagcttct |
20126354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 20133729 - 20133578
Alignment:
| Q |
1 |
aggtggtgtattttgttccgaatacaataaatgtcagtgttttcagtttgcagcataatagttggagaaatattcaaaattctccagtgactcatgatta |
100 |
Q |
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|||| |||||||| ||||| ||||||| |||||| |||||||||||||| |||||| |||||||| ||||||| ||||||| |||| |||||||| |
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| T |
20133729 |
aggtcgtgtatttagttccaaatacaacaaatgtaagtgttttcagttttggcgataatatttggagaactattcaagattctcccgtgaatcatgattg |
20133630 |
T |
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| Q |
101 |
ctccatgaatgctgtgcatctgagtggctgtattagttggttggcaattcgc |
152 |
Q |
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| T |
20133629 |
ttggataaatgttgtgaatctgagtgactgtattagttggttggcaattcgc |
20133578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 20141176 - 20140991
Alignment:
| Q |
55 |
ataatagttggagaaatattcaaaattctccagtgactcatgattactccatgaatgctgtgcatctgagtggctgtattagttggttggcaattcgcaa |
154 |
Q |
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|||||| |||||||| ||||||| ||||||| ||| ||||||||||| || ||| |||| ||||| || ||||||||||||||||||||||||||| |
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| T |
20141176 |
ataatatttggagaactattcaagattctcctgtggatcatgattactggatcaattttgtgaatctgcatgactgtattagttggttggcaattcgcaa |
20141077 |
T |
|
| Q |
155 |
ttactctgctccttataattgcgagaatattgctgttcagcagtttgtgattatatctattgacttgagcactgagacacattctc |
240 |
Q |
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||| ||||||| |||| ||| | | |||||| || || | || ||||||||| | ||| || | ||| |||| ||||||||||||| |
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| T |
20141076 |
ttattctgctcgttatgatttcaacaatattactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattctc |
20140991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 20361615 - 20361472
Alignment:
| Q |
1 |
aggtggtgtattttgttccgaatacaataaatgtcagtgttttcagtttgcagcataatagttggagaaatattcaaaattctccagtgactcatgatta |
100 |
Q |
| |
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|||||| |||||| ||||| ||||||| ||||| ||||||||||| | |||||| |||||||||||||||||||||||| ||| ||||| ||| |
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| T |
20361615 |
aggtggcgtatttagttccaaatacaaataatgtacgtgttttcagtaagggagataatatttggagaaatattcaaaattctcccgtggatcatggtta |
20361516 |
T |
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| Q |
101 |
ctccatgaatgctgtgcatctgagtggctgtattagttggttgg |
144 |
Q |
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|| ||||||| |||| | || |||| ||||||||||||||| |
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| T |
20361515 |
ttcgatgaatgttgtgaacctaagtgagagtattagttggttgg |
20361472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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