View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_high_9 (Length: 655)
Name: NF11703_high_9
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_high_9 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Complemental strand, 1221406 - 1220781
Alignment:
| Q |
18 |
acaatcctgctgagagaatatctgccaaagcagcacttgatcatccatactttgacagtcttgacaagtctcaatattaatgatggctctagccaaaatg |
117 |
Q |
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| T |
1221406 |
acaatcctgctgagagaatatctgccaaagcagcacttgatcatccatactttgacagtcttgacaagtctcaatattaatgatggctctagccaaaatg |
1221307 |
T |
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| Q |
118 |
tctggtgcagaagtgtgtgttaagcaacattgtattgcagtcagtgaaaataaattcactacatggagtttaagcatctataaagtggttattatactgt |
217 |
Q |
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| T |
1221306 |
tctggtgcagaagtgtgtgttaagcaacattgtattgcagtcagtgaaaataaattcactacatggagtttaagtatctataaagtggttattatactgt |
1221207 |
T |
|
| Q |
218 |
tagtgttatgtaatattttttcatcatcttggtgatgcaaacaatttactctcggtttagttcatggttgtcatgtctctctctgtaggaccatagaaca |
317 |
Q |
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| T |
1221206 |
ta------tgtaatattttctcatcatcttggtgatgcaaacaatttactctcggtttagttcatggttgtcatgtctctctctgtaggaccatagaaca |
1221113 |
T |
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| Q |
318 |
actttatttaccttttaaagttgtattatctgttttgattgaaacttgaaagtgatagttcgtgaggatgctgctattactttagtcaatgcataacatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1221112 |
actttatttaccttttaaagttgtattatctgttttgattgaaacttgaaagtgatagttcgtgaggatgctgctattactttaatcaatgcataacatt |
1221013 |
T |
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| Q |
418 |
tcagttttagaccggcatttaattgggaaagaattatgggatatgtttgccatctttgtctttgtttgtgcatttctagtgtcttgccagtgagggtgtt |
517 |
Q |
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| T |
1221012 |
tcagttttagaccggcatttaattgggaaagaattatgggatatgtttgccatctttgtctttgtttgtgcatttctagtgtcttgccagtgagggtgtt |
1220913 |
T |
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| Q |
518 |
ttctcttttcacagggaaggcaaaaagtaaaggctacgttgggcagtcaaagatttagtatacttgtttcatgggg-----atttttcttttcacaggtc |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1220912 |
ttctcttttcacagggaaggcaaaaagtaaaggctacgttgggcagtcaaagatttagtatacttgtttcatggggatagcatttttcttttcacaggtc |
1220813 |
T |
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| Q |
613 |
actatcgaagtattgatcacttcatctctgct |
644 |
Q |
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| T |
1220812 |
actatcgaagtattcatcacttcatctctgct |
1220781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 29884 - 29731
Alignment:
| Q |
17 |
cacaatcctgctgagagaatatctgccaaagcagcacttgatcatccatactttgacagtc--------ttgacaagtctcaatattaatgatggctcta |
108 |
Q |
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||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
29884 |
cacaatcatgctgagagaatatatgccaaaacagcacttgatcatccatactttgacagtcttgagtcattgacaagtctcaatattaatgatggcttta |
29785 |
T |
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| Q |
109 |
gccaaaatgtctggtgcagaagtgtgtgttaa-gcaacattgtattgcagtcag |
161 |
Q |
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|||||||||| ||||||| |||||| |||||| ||| |||| ||||||| |||| |
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| T |
29784 |
gccaaaatgtttggtgcaaaagtgtatgttaaggcagcattatattgcattcag |
29731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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