View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_1 (Length: 1339)

Name: NF11703_low_1
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_1
NF11703_low_1
[»] chr1 (11 HSPs)
chr1 (651-1326)||(17560737-17561413)
chr1 (14-310)||(17559958-17560269)
chr1 (667-911)||(4366475-4366719)
chr1 (688-896)||(21855384-21855592)
chr1 (675-897)||(39379049-39379271)
chr1 (677-805)||(4570879-4571007)
chr1 (688-816)||(10218926-10219054)
chr1 (1008-1075)||(39379409-39379476)
chr1 (666-752)||(4014944-4015030)
chr1 (999-1122)||(4366825-4366948)
chr1 (707-815)||(4016792-4016900)
[»] chr7 (28 HSPs)
chr7 (666-902)||(29874365-29874602)
chr7 (675-908)||(29859303-29859536)
chr7 (666-912)||(29881101-29881347)
chr7 (673-911)||(29454089-29454327)
chr7 (1002-1163)||(29859021-29859182)
chr7 (666-911)||(29921972-29922211)
chr7 (666-912)||(29867084-29867327)
chr7 (666-902)||(29430980-29431213)
chr7 (1007-1079)||(29431339-29431411)
chr7 (1008-1122)||(29898985-29899099)
chr7 (707-805)||(29445676-29445774)
chr7 (696-911)||(29895312-29895530)
chr7 (711-911)||(29920067-29920267)
chr7 (1011-1076)||(29476676-29476741)
chr7 (707-905)||(29899220-29899424)
chr7 (673-757)||(14076678-14076762)
chr7 (673-757)||(14386706-14386790)
chr7 (999-1079)||(29454436-29454516)
chr7 (673-752)||(660833-660912)
chr7 (1024-1090)||(24391057-24391123)
chr7 (1007-1061)||(29106486-29106540)
chr7 (1008-1069)||(29445989-29446050)
chr7 (665-733)||(19351047-19351115)
chr7 (1010-1066)||(19351386-19351442)
chr7 (1002-1066)||(26237281-26237345)
chr7 (707-758)||(29106813-29106864)
chr7 (1231-1273)||(29106277-29106319)
chr7 (1024-1073)||(19637584-19637633)
[»] chr3 (1 HSPs)
chr3 (666-912)||(3625579-3625825)
[»] chr4 (11 HSPs)
chr4 (676-897)||(3557586-3557807)
chr4 (666-911)||(3560937-3561182)
chr4 (676-815)||(3565686-3565825)
chr4 (675-912)||(1686273-1686510)
chr4 (687-757)||(53774840-53774910)
chr4 (1008-1073)||(3565401-3565466)
chr4 (673-757)||(11970968-11971052)
chr4 (1009-1072)||(1686634-1686697)
chr4 (688-749)||(53430100-53430161)
chr4 (1231-1268)||(3561517-3561554)
chr4 (668-757)||(11981664-11981753)
[»] chr5 (2 HSPs)
chr5 (688-896)||(24330900-24331108)
chr5 (689-818)||(29597554-29597683)
[»] chr2 (2 HSPs)
chr2 (666-733)||(14514924-14514991)
chr2 (865-910)||(14514730-14514775)
[»] chr6 (2 HSPs)
chr6 (686-757)||(6921349-6921420)
chr6 (675-752)||(6935206-6935283)
[»] scaffold0242 (2 HSPs)
scaffold0242 (855-911)||(13898-13954)
scaffold0242 (855-911)||(22733-22789)


Alignment Details
Target: chr1 (Bit Score: 601; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 651 - 1326
Target Start/End: Original strand, 17560737 - 17561413
Alignment:
Q  651 ataaccatcatagctataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatata 750  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  17560737 ataaccatcatagctataatcaatttgaagatcgttataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatata 17560836  T
Q  751 accaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggca 850  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  17560837 accaaatcgatttccttgtaacaataagaaaaacaaagacagtcccccaacacaccaaaagttggttctatggttggcacctcgtcaaaatcacgaggca 17560936  T
Q  851 ataagtactgattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaacaccaatatcttccagattttcaaaatcataatgtaatac 950  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17560937 ataagtactaattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaacaccaatatcttccagattttcaaaatcataatgtaatac 17561036  T
Q  951 attttgaatagccaatcagttaagagtgcttttgaaatacacattcatgtccaaaacaagaggaacaaccgggaaactttgaatatctctccaaacgtta 1050  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17561037 attttgaatagccaaccagttaagagtgcttttgaaatacacattcatgtccaaatcaagaggaacaaccgggaaactttgaatatctctccaaacgtta 17561136  T
Q  1051 tcacccaaactt-aaaattctcacattgctactcctttgacgtggattgtaacgtgaagccactaccttataaatgccggtggaagtatcacaaccaaag 1149  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17561137 tcacccaaacttaaaaattctcacattgctactcctttgacatggattgtaacgtgaagccactaccttataaatgtcggtggaagtatcacaaccaaag 17561236  T
Q  1150 ttgaattggtaataggcatgaaacctggaacagccgaataaatctttttgaaaataaccaaattttggagttatttcttttgtggctgggttcaataaac 1249  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17561237 ttgaattggtaataggcatgaaacctagaatagccgaataaatcttcttgaaaataaccaaattttggagttatttcttttgtggctgggttccataaac 17561336  T
Q  1250 ggagccagtactcttgataatcgtaaaaagaataacttccaccttccaaacatatcaatccattgcaagaaccaatt 1326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17561337 ggagccagtactcttgataatcgtaaaaagaataacttccaccttccaaacatatcaatccattgcaaggaccaatt 17561413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 17559958 - 17560269
Alignment:
Q  14 tggacatcatgaagctaacctggcttttcaattagttggaattgaacttgttgtagatagtctctccacagtttggcttgatgcttagaggataaagatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17559958 tggacatcatgaagctaacctggcttttcaattagttggaattgaacttgttgtagatagtctctccacagtttggcttgatgcttagaggataaagatt 17560057  T
Q  114 aaaga-----------gctacaagattcacatgattttgaatttgatgttgcacaagaatataaatcaactactttctacatacacaatttgtcattctc 202  Q
    |||||           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17560058 aaagaactatatatgtgctacaagattcacatgattttgaatttgatgttgcacaataatataaatcaactactttctacatacacaatttgtcattctc 17560157  T
Q  203 taagcatcaagtttaattgtaattaaaaatcatatct---acaagttcaaatgcttgcaactacttca-agggcagattaattttacaatactcgatgga 298  Q
    |||||||||||||||||||| ||||| ||||||||||   |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  17560158 taagcatcaagtttaattgtcattaacaatcatatctacaacaagttcaaatgcttgcaactacttgacagggcagattaattttacaatactcgatgga 17560257  T
Q  299 aaatcatattaa 310  Q
    ||||||||||||    
T  17560258 aaatcatattaa 17560269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 667 - 911
Target Start/End: Original strand, 4366475 - 4366719
Alignment:
Q  667 taatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcct 766  Q
    ||||| ||||||||||  |  ||||||| | |||| |||||||||||||| ||||||||||| ||||||||||  ||||||| ||| |||||  ||| ||    
T  4366475 taatctatttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttct 4366574  T
Q  767 tgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgta 866  Q
    |||||  ||||||||||||||| |||||||||||||||||||  ||||||||  | | |||||| || |||||| || ||||||  ||||| ||||||||    
T  4366575 tgtaagaataagaaaaacaaaggcagtcccccaacacaccaactgttggttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgta 4366674  T
Q  867 tgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 911  Q
    |||||| || | || |||||||||||||||| ||||||| |||||    
T  4366675 tgtctctgtacccagatcaagcgaaacaataacaaattgctcaac 4366719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 688 - 896
Target Start/End: Original strand, 21855384 - 21855592
Alignment:
Q  688 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 787  Q
    ||||||| | |||||| | ||||||||||||||||||||||||||| |||||  | ||||||||| |||||| ||||||||||   ||| ||||||||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaa 21855483  T
Q  788 gacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaag 887  Q
    ||||| ||| ||| |||||||||||||| ||| | |  || || || |||||| |||||||||  | ||| |||||||||||||| |||  |||||||||    
T  21855484 gacagcccctcaatacaccaatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaag 21855583  T
Q  888 cgaaacaat 896  Q
     ||||||||    
T  21855584 agaaacaat 21855592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 675 - 897
Target Start/End: Original strand, 39379049 - 39379271
Alignment:
Q  675 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 774  Q
    ||||||||| | |||||| ||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||  |||   |||||| |    
T  39379049 ttgaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagtttttctgtaacaa 39379148  T
Q  775 taagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcag 874  Q
    |||||||||||||||||||| ||||||||||||| | |||| |||   |  || ||||| |||||| |   ||||||    ||||| |||||||| ||||    
T  39379149 taagaaaaacaaagacagtcacccaacacaccaaaacttggctctgcagacggaacctcatcaaaaccccaaggcaaccgatactggttgtatgtttcag 39379248  T
Q  875 tcctcaaatcaagcgaaacaata 897  Q
    ||| ||||||||| |||||||||    
T  39379249 tccccaaatcaagtgaaacaata 39379271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 677 - 805
Target Start/End: Complemental strand, 4571007 - 4570879
Alignment:
Q  677 gaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgata 776  Q
    |||||||  ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||  ||||| |||    |||    
T  4571007 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 4570908  T
Q  777 agaaaaacaaagacagtcccccaacacac 805  Q
    |||||||||||| ||| | ||||||||||    
T  4570907 agaaaaacaaaggcagcctcccaacacac 4570879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 688 - 816
Target Start/End: Complemental strand, 10219054 - 10218926
Alignment:
Q  688 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 787  Q
    ||||||||| |||| ||| |||||||||||||||||| ||||||||||||||  ||||||| ||| |||||  |||||||||    | ||||||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttgtgcaaaaaagaaaaacaaa 10218955  T
Q  788 gacagtcccccaacacaccaatagttggt 816  Q
    | ||  |||||||||||||||||||||||    
T  10218954 ggcaaccccccaacacaccaatagttggt 10218926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1008 - 1075
Target Start/End: Original strand, 39379409 - 39379476
Alignment:
Q  1008 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacat 1075  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||| ||||||||    
T  39379409 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcacat 39379476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 666 - 752
Target Start/End: Original strand, 4014944 - 4015030
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 752  Q
    |||||| ||| ||||||| |  ||||||| | |||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  4014944 ataatctattagaagatcatggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataac 4015030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 999 - 1122
Target Start/End: Original strand, 4366825 - 4366948
Alignment:
Q  999 gtccaaaacaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgctactcctttgacgtggattg 1098  Q
    |||||||  |||||||||||  || ||||||| |||||||||||||||||||||||||| ||||| ||| |||||| |||| |||  ||||  ||||| |    
T  4366825 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatgg 4366924  T
Q  1099 taacgtgaagccactaccttataa 1122  Q
    ||||| ||  |||| |||||||||    
T  4366925 taacgggacaccaccaccttataa 4366948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 707 - 815
Target Start/End: Original strand, 4016792 - 4016900
Alignment:
Q  707 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacacc 806  Q
    ||||||| ||||||||||| |||||||||||||  ||||| |||   |||| | ||| | | ||   ||||||||||||||| ||| ||||||||||||     
T  4016792 gagtccaggaatcttcaactccaaatttcttcatctgccagatacagaaattggtttgcctataggaataagaaaaacaaaggcagccccccaacacact 4016891  T
Q  807 aatagttgg 815  Q
    |||||||||    
T  4016892 aatagttgg 4016900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 6e-62; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 6e-62
Query Start/End: Original strand, 666 - 902
Target Start/End: Complemental strand, 29874602 - 29874365
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 765  Q
    |||||||||||||||||  | |||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||||  |||||  |||||    
T  29874602 ataatcaatttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagtttcc 29874503  T
Q  766 ttgtaacgataagaaaaacaaagacagtc-ccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattg 864  Q
    ||||||| ||||||||||||||||||||| |||||||||||| ||| |||||| |   | ||||||||| ||||||||| ||||||| |||||| |||||    
T  29874502 ttgtaacaataagaaaaacaaagacagtcgccccaacacacctatatttggttgtgcaggtggcacctcatcaaaatcacgaggcaagaagtaccgattg 29874403  T
Q  865 tatgtctcagtcctcaaatcaagcgaaacaataccaaa 902  Q
    ||||||||||| ||||||||||  ||||||||| ||||    
T  29874402 tatgtctcagttctcaaatcaaatgaaacaataacaaa 29874365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 675 - 908
Target Start/End: Complemental strand, 29859536 - 29859303
Alignment:
Q  675 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 774  Q
    |||||||| || |||||||||| |||| ||||| ||||||||||||||||| |||||||||||||  | ||||||||| |||||  |||||||||||| |    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaacaa 29859437  T
Q  775 taagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcag 874  Q
    |||||||||||||||  |||||||||||||||||||||||||   |  |  |||||||| |||||  || ||||||||||||| ||||||||||| |||     
T  29859436 taagaaaaacaaagatggtcccccaacacaccaatagttggtatcacaggcggcacctcatcaaacccacgaggcaataagtattgattgtatgtttcac 29859337  T
Q  875 tcctcaaatcaagcgaaacaataccaaattgttc 908  Q
    ||| ||||||||| ||||||||| ||||||||||    
T  29859336 tccccaaatcaagtgaaacaataacaaattgttc 29859303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 666 - 912
Target Start/End: Complemental strand, 29881347 - 29881101
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 765  Q
    ||||||||||||||||   |  |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| | ||  |||||  |||||    
T  29881347 ataatcaatttgaagactatggtaactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagtttcc 29881248  T
Q  766 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 865  Q
    ||||||| |||| |||| ||||| |||||| |||||||||||| | |||||  |   | ||||||||| ||||||    |||||| |   || |||||||    
T  29881247 ttgtaacaataacaaaagcaaaggcagtcctccaacacaccaacaattggtcgtgcaggtggcacctcatcaaaactcggaggcagtcgatattgattgt 29881148  T
Q  866 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaaca 912  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||||    
T  29881147 atgtctcagtccccaaatcaagtgaaacaataacaaattggtcaaca 29881101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 673 - 911
Target Start/End: Original strand, 29454089 - 29454327
Alignment:
Q  673 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaac 772  Q
    ||||||||||| | |||||||||| ||| |||| ||||||||||||||||||| ||||||||| |||   |||||||||| ||||||  ||||||||||     
T  29454089 atttgaagatcttgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttgtaag 29454188  T
Q  773 gataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctc 872  Q
     ||||||||||||||| |   ||||||| |||||||  |||||  ||   | ||||||||| ||||||||| ||||||||  ||||| |||||| |||||    
T  29454189 aataagaaaaacaaaggcttccccccaaaacaccaaccgttggagcttcaggtggcacctcatcaaaatcacgaggcaattggtacttattgtacgtctc 29454288  T
Q  873 agtcctcaaatcaagcgaaacaataccaaattgttcaac 911  Q
    ||||| ||||||||| |||| |||| |||| || |||||    
T  29454289 agtccccaaatcaagtgaaataataacaaactgctcaac 29454327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 1002 - 1163
Target Start/End: Complemental strand, 29859182 - 29859021
Alignment:
Q  1002 caaaacaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgctactcctttgacgtggattgtaa 1101  Q
    ||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||  || |||| ||||||||    
T  29859182 caaaagaataggatcaaccgggaaactttcaatatctctccaaacgttatcacccaaacttagaattctcacattgcttctcagttcacgttgattgtaa 29859083  T
Q  1102 cgtgaagccactaccttataaatgccggtggaagtatcacaaccaaagttgaattggtaata 1163  Q
    ||||  ||||| ||||||||| ||| ||| ||| ||||||| ||||||  ||||| ||||||    
T  29859082 cgtgcggccacgaccttataagtgctggtagaattatcacatccaaaggagaatttgtaata 29859021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 666 - 911
Target Start/End: Original strand, 29921972 - 29922211
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 765  Q
    |||||| ||| ||||||  | ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||  ||||||||||| |||||  ||||     
T  29921972 ataatctattagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttct 29922071  T
Q  766 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 865  Q
    ||||||  ||||||||||||||| ||| |||||||||||||||  |||||||||   | |||||| ||      |||| ||||||| |  || |||||||    
T  29922072 ttgtaagcataagaaaaacaaaggcagccccccaacacaccaacggttggttctgcagatggcacttc------atcaagaggcaacagatattgattgt 29922165  T
Q  866 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 911  Q
    ||||||| ||||  |||||||| ||||| ||| |||| ||||||||    
T  29922166 atgtctccgtccctaaatcaagagaaacgataacaaaatgttcaac 29922211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 666 - 912
Target Start/End: Complemental strand, 29867327 - 29867084
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 765  Q
    |||||||||||||||||  |  |||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||||  |||||  |||||    
T  29867327 ataatcaatttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttcc 29867228  T
Q  766 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 865  Q
    ||   |  ||||||||||||||| ||||||||||||||||||| | | || | |   |  |||||||| ||||||    |||||| |  ||| |||||||    
T  29867227 tt---agaataagaaaaacaaaggcagtcccccaacacaccaacaataggatatgcagacggcacctcatcaaaacttggaggcagtcggtattgattgt 29867131  T
Q  866 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaaca 912  Q
    || ||||||||| ||||||||| ||||||||| |||| || ||||||    
T  29867130 atttctcagtccccaaatcaagtgaaacaataacaaactggtcaaca 29867084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 666 - 902
Target Start/End: Original strand, 29430980 - 29431213
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 765  Q
    |||||| ||||||||||| | |||||||||| |||||||| | ||||||||||||| | ||||||||||| |||   |||||||||| |||| | | |||    
T  29430980 ataatctatttgaagatcctgataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtcc 29431079  T
Q  766 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 865  Q
    ||  ||   |||||||||||||| ||  ||||||| |||  ||   ||||  | ||   ||||||||| ||||||||| ||||||| ||||||| ||| |    
T  29431080 ttagaa---taagaaaaacaaaggcatccccccaaaacatgaaccattggagccataaatggcacctcatcaaaatcacgaggcaacaagtacttattat 29431176  T
Q  866 atgtctcagtcctcaaatcaagcgaaacaataccaaa 902  Q
    |||||||||||| |||||||||||||| |||| ||||    
T  29431177 atgtctcagtccccaaatcaagcgaaagaataacaaa 29431213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1007 - 1079
Target Start/End: Original strand, 29431339 - 29431411
Alignment:
Q  1007 caagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgct 1079  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||| | ||||||||    
T  29431339 caagaggaacaacagggaaactttcaatatctctccaaacattatcactcaaacttaaaattttgacattgct 29431411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1008 - 1122
Target Start/End: Complemental strand, 29899099 - 29898985
Alignment:
Q  1008 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgctactcctttgacgtggattgtaacgtgaa 1107  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||| ||||| | |||| |||||||||| |||  | ||  ||||||||||||  |     
T  29899099 aagaggaacaactgggaaactttcaatatctctccaaacattatcaccaaaactgagaattttcacattgcttctcaatcgaactggattgtaacggtat 29899000  T
Q  1108 gccactaccttataa 1122  Q
    ||||| |||||||||    
T  29898999 gccaccaccttataa 29898985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 707 - 805
Target Start/End: Original strand, 29445676 - 29445774
Alignment:
Q  707 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacac 805  Q
    |||||||||| ||||||||||| |||| |||||  ||||||||||  |||||| |||||||||||  ||||||| |||||||  || ||||||||||||    
T  29445676 gagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataagaacaacaaaggaagccccccaacacac 29445774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 696 - 911
Target Start/End: Complemental strand, 29895530 - 29895312
Alignment:
Q  696 tctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgt---aacgataagaaaaacaaagacag 792  Q
    |||||| ||| || ||||||| ||||| | ||||||||||||||  ||||||| ||| || ||| |||||||||   ||  |||||||||||||||||||    
T  29895530 tctaagtaattgactccaagactcttctatcccaaatttcttcatctgccataaaacaaattcgttttccttgtcagaagaataagaaaaacaaagacag 29895431  T
Q  793 tcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaagcgaaa 892  Q
     | ||||| |||| ||  ||||||| | | |  |||||||| |||||| |  ||||||  | ||| |||||||| ||||| || | ||  ||||||||||    
T  29895430 ccacccaagacactaaccgttggttgtgtagggggcacctcatcaaaacccagaggcagcaggtattgattgtaagtctccgttcccagctcaagcgaaa 29895331  T
Q  893 caataccaaattgttcaac 911  Q
    ||||| ||||||| |||||    
T  29895330 caataacaaattgctcaac 29895312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 711 - 911
Target Start/End: Original strand, 29920067 - 29920267
Alignment:
Q  711 ccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacaccaata 810  Q
    |||||||| |||||  || ||||||||||  | |||||| |  || ||| |||||||||||  ||||||| || |||| ||| | ||||||||||||| |    
T  29920067 ccaagaatattcaagtccgaatttcttcatcttccatattataaattcggtttccttgtaagaataagaagaaaaaaggcagcctcccaacacaccaaga 29920166  T
Q  811 gttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaa 910  Q
    ||||||||||    |||||| || |||||  || | |||| ||| ||||||| ||| ||||| |||| |||||  || ||||||||| ||||||||||||    
T  29920167 gttggttctacaagtggcacttcatcaaatccacggggcagtaaatactgatggtaggtctctgtccccaaatggagagaaacaataacaaattgttcaa 29920266  T
Q  911 c 911  Q
    |    
T  29920267 c 29920267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1011 - 1076
Target Start/End: Original strand, 29476676 - 29476741
Alignment:
Q  1011 aggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacatt 1076  Q
    ||||||||| |||||||||||||| ||||||||||| ||||| || ||||| | ||||||||||||    
T  29476676 aggaacaacggggaaactttgaatctctctccaaacattatctccaaaactgagaattctcacatt 29476741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 707 - 905
Target Start/End: Complemental strand, 29899424 - 29899220
Alignment:
Q  707 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatc------gctttccttgtaacgataagaaaaacaaagacagtcccccaa 800  Q
    ||||||| || ||||||||||||||||||||||  ||||||||||| |||||      | | |  ||||||  | ||||||||||||| ||| |||||||    
T  29899424 gagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaatcaaaattggtattattgtaaaaacaagaaaaacaaaggcagccccccaa 29899325  T
Q  801 cacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaagcgaaacaatacca 900  Q
    ||||||||  ||||| || |  |  ||||| || |||||  || ||||||| | |||||| || |||||||| |||  ||||||||| ||||||||| ||    
T  29899324 cacaccaaatgttggctccacagacggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaataaca 29899225  T
Q  901 aattg 905  Q
    |||||    
T  29899224 aattg 29899220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 673 - 757
Target Start/End: Complemental strand, 14076762 - 14076678
Alignment:
Q  673 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 757  Q
    ||||||||||  | |||||||||| |||| ||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  14076762 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14076678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 673 - 757
Target Start/End: Complemental strand, 14386790 - 14386706
Alignment:
Q  673 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 757  Q
    ||||||||||  | |||||||||| |||| ||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  14386790 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 999 - 1079
Target Start/End: Original strand, 29454436 - 29454516
Alignment:
Q  999 gtccaaaacaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgct 1079  Q
    |||||||  ||||||| |||| |||||||||| ||||||||||||||| ||||||  |||||||| |||| | ||||||||    
T  29454436 gtccaaatgaagaggagcaacagggaaactttcaatatctctccaaacattatcatgcaaacttagaattttgacattgct 29454516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 673 - 752
Target Start/End: Original strand, 660833 - 660912
Alignment:
Q  673 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 752  Q
    ||||||||||  | |||||||||| |||||||| |||||||||| |||||||| | ||||| |||||  |||||||||||    
T  660833 atttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataac 660912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1024 - 1090
Target Start/End: Complemental strand, 24391123 - 24391057
Alignment:
Q  1024 aaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgctactcctttgac 1090  Q
    ||||||||||||| ||||||||  |||||||||||||| |||| ||||||||  |||||| ||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatctctactcatttgac 24391057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1007 - 1061
Target Start/End: Complemental strand, 29106540 - 29106486
Alignment:
Q  1007 caagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaact 1061  Q
    |||||||| ||||||||||||||| || |||||||||||| |||||||| |||||    
T  29106540 caagaggatcaaccgggaaactttcaacatctctccaaacattatcaccaaaact 29106486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1008 - 1069
Target Start/End: Original strand, 29445989 - 29446050
Alignment:
Q  1008 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattc 1069  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||||| | ||||| |||||    
T  29445989 aagaggaacaacggggaaactttgaatctgtctccaaacattatcacctatacttagaattc 29446050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 665 - 733
Target Start/End: Original strand, 19351047 - 19351115
Alignment:
Q  665 tataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatt 733  Q
    |||||||||| |||||||| | | |||||||| | ||||||||||||||||| || ||||| |||||||    
T  19351047 tataatcaatgtgaagatcctgaaaactaattttgaggaatggagtccaagactcctcaactccaaatt 19351115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1010 - 1066
Target Start/End: Original strand, 19351386 - 19351442
Alignment:
Q  1010 gaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaa 1066  Q
    ||||||||| ||| |||||| |||||||||||||||| ||||||| |||||| ||||    
T  19351386 gaggaacaatcggtaaacttggaatatctctccaaacattatcactcaaactaaaaa 19351442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1002 - 1066
Target Start/End: Complemental strand, 26237345 - 26237281
Alignment:
Q  1002 caaaacaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaa 1066  Q
    ||||| ||||||||| ||||| ||||||||||||| |||||||  |||| |||||||||| ||||    
T  26237345 caaaataagaggaacgaccggaaaactttgaatatttctccaacagttaacacccaaactaaaaa 26237281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 707 - 758
Target Start/End: Complemental strand, 29106864 - 29106813
Alignment:
Q  707 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatc 758  Q
    |||||||||| ||||||||||||||||||||||  ||||||| ||| |||||    
T  29106864 gagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaatc 29106813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1231 - 1273
Target Start/End: Complemental strand, 29106319 - 29106277
Alignment:
Q  1231 gtggctgggttcaataaacggagccagtactcttgataatcgt 1273  Q
    |||||||||||| ||||||||||||||||||||  ||||||||    
T  29106319 gtggctgggttccataaacggagccagtactctatataatcgt 29106277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1024 - 1073
Target Start/End: Original strand, 19637584 - 19637633
Alignment:
Q  1024 aaactttgaatatctctccaaacgttatcacccaaacttaaaattctcac 1073  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||| ||||||    
T  19637584 aaactttgaatatttctccaaactttatcaccaaaactaaaaactctcac 19637633  T

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Target: chr3 (Bit Score: 91; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 666 - 912
Target Start/End: Complemental strand, 3625825 - 3625579
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 765  Q
    |||||| | ||||||||  | |||||||||| |||| ||| |||||||||| ||||||||||||||||||||||  ||||||||||  | || | || ||    
T  3625825 ataatctaattgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggttacc 3625726  T
Q  766 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 865  Q
    ||||||  ||||||||||||||| ||||||||||||||||||| | |||||||||| |  |||||||  |||||  || ||||||   | || |||||||    
T  3625725 ttgtaagaataagaaaaacaaaggcagtcccccaacacaccaacatttggttctataggaggcaccttatcaaatccacgaggcagccaatagtgattgt 3625626  T
Q  866 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaaca 912  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||||    
T  3625625 atgtctcagtccccaaatcaagtgaaacaataacaaattgctcaaca 3625579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 3e-33; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 676 - 897
Target Start/End: Complemental strand, 3557807 - 3557586
Alignment:
Q  676 tgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgat 775  Q
    |||||||| | |||||||||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||| |||||||||||  ||    
T  3557807 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgtaagaat 3557708  T
Q  776 aagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagt 875  Q
    ||||||||||||||||||||| |||||||||||  ||||| ||    || |||| ||| |||||| |  |||||||    || || ||||||| ||||||    
T  3557707 aagaaaaacaaagacagtccctcaacacaccaacggttggctcctcagtcggcatctcatcaaaaccccgaggcaaccgatattggttgtatgactcagt 3557608  T
Q  876 cctcaaatcaagcgaaacaata 897  Q
    || ||||||||| |||||||||    
T  3557607 ccccaaatcaagtgaaacaata 3557586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 666 - 911
Target Start/End: Original strand, 3560937 - 3561182
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 765  Q
    |||||| | ||||||||| | |||||||||| |||| ||| |||||||||| ||||||||||||||||| ||||  ||||| ||||  |||||| |||||    
T  3560937 ataatctaattgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttcc 3561036  T
Q  766 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 865  Q
    ||||||  ||||||||||||||| || |||||||| ||||||| | | || |||   |  || ||||  |||||| |  ||||||| || || |||||||    
T  3561037 ttgtaagaataagaaaaacaaaggcaatcccccaagacaccaagattaggctctgcaggcggtaccttatcaaaaccccgaggcaacaaatattgattgt 3561136  T
Q  866 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 911  Q
    |||||||||| | || |||||||||||||||| |||| || |||||    
T  3561137 atgtctcagttcccagatcaagcgaaacaataacaaactgctcaac 3561182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 676 - 815
Target Start/End: Complemental strand, 3565825 - 3565686
Alignment:
Q  676 tgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgat 775  Q
    |||||||| | |||||||||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||| ||| ||| |||| ||    
T  3565825 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaat 3565726  T
Q  776 aagaaaaacaaagacagtcccccaacacaccaatagttgg 815  Q
    ||||||||||||| ||||||| ||||||||||| ||||||    
T  3565725 aagaaaaacaaaggcagtccctcaacacaccaacagttgg 3565686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 675 - 912
Target Start/End: Original strand, 1686273 - 1686510
Alignment:
Q  675 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 774  Q
    ||||||||| | |||||||  | |||| ||| |||||||||| || ||||| ||||||| |||||  ||||||||||  | || | |   ||| |||  |    
T  1686273 ttgaagatcataataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataataagattggtcctcttataagaa 1686372  T
Q  775 taagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcag 874  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||    ||||||||  ||||| | ||||||||    || ||||||||||||||||    
T  1686373 taagaaaaacaaaggcagtcccccaacacaccaacagttggctctataagcggcacctcagcaaaaccctgaggcaaccgatattgattgtatgtctcag 1686472  T
Q  875 tcctcaaatcaagcgaaacaataccaaattgttcaaca 912  Q
    ||| ||||| ||| ||||||||| |||  |||||||||    
T  1686473 tccccaaattaagtgaaacaataacaatctgttcaaca 1686510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 687 - 757
Target Start/End: Complemental strand, 53774910 - 53774840
Alignment:
Q  687 ataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 757  Q
    |||||||||| |||||||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  53774910 ataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaat 53774840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1008 - 1073
Target Start/End: Complemental strand, 3565466 - 3565401
Alignment:
Q  1008 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcac 1073  Q
    |||||||||| |||||||||||| ||||| ||||||||| |||||||| ||||| |||| ||||||    
T  3565466 aagaggaacagccgggaaactttcaatatttctccaaacattatcacctaaactgaaaactctcac 3565401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 673 - 757
Target Start/End: Original strand, 11970968 - 11971052
Alignment:
Q  673 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 757  Q
    ||||||||||  | ||||||||||||||| ||| |||||||||| ||||| || ||||||| |||||  ||||||||||| ||||    
T  11970968 atttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaat 11971052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1009 - 1072
Target Start/End: Original strand, 1686634 - 1686697
Alignment:
Q  1009 agaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctca 1072  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||||| ||||| |||| |||||    
T  1686634 agaggaataaccgggaaactttcaatatttctccaaacattatcacctaaactgaaaactctca 1686697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 688 - 749
Target Start/End: Original strand, 53430100 - 53430161
Alignment:
Q  688 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatat 749  Q
    ||||||||| |||||||| ||||||||||||||||  ||||| |||||||||  ||||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatat 53430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1231 - 1268
Target Start/End: Original strand, 3561517 - 3561554
Alignment:
Q  1231 gtggctgggttcaataaacggagccagtactcttgata 1268  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  3561517 gtggctgggttccataaacggagccagtaatcttgata 3561554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 668 - 757
Target Start/End: Original strand, 11981664 - 11981753
Alignment:
Q  668 aatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 757  Q
    |||||||||||||||    |||||||||| |||| ||| ||||||| || ||||| || ||||||| |||||  ||||||||||| ||||    
T  11981664 aatcaatttgaagattaagataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaat 11981753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 688 - 896
Target Start/End: Original strand, 24330900 - 24331108
Alignment:
Q  688 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 787  Q
    ||||||| | |||||| | ||||||||||||||||||||||||||| |||||  | ||||||||| |||||| ||||||||||   ||| ||||||||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaa 24330999  T
Q  788 gacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaag 887  Q
    ||||| ||| ||| |||||||||||||| ||| | |  || || || |||||| |||||||||  | ||| |||||||||||||| |||  |||||||||    
T  24331000 gacagcccctcaatacaccaatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaag 24331099  T
Q  888 cgaaacaat 896  Q
     ||||||||    
T  24331100 agaaacaat 24331108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 689 - 818
Target Start/End: Original strand, 29597554 - 29597683
Alignment:
Q  689 aactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaag 788  Q
    |||||||| |||||||| |||||||||| | |||||| |||||||   |||  ||||||||||| ||||   |||||||| || | | ||||||||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaatggtgagaaaaacaaag 29597653  T
Q  789 acagtcccccaacacaccaatagttggttc 818  Q
     | ||||  ||| ||| |||||||||||||    
T  29597654 gcggtccagcaaaacagcaatagttggttc 29597683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 666 - 733
Target Start/End: Complemental strand, 14514991 - 14514924
Alignment:
Q  666 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatt 733  Q
    |||||| ||||||||||   ||||||||||| |||||||| ||||||||||||||||||| |||||||    
T  14514991 ataatctatttgaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaatt 14514924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 865 - 910
Target Start/End: Complemental strand, 14514775 - 14514730
Alignment:
Q  865 tatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaa 910  Q
    |||||||| ||||||||||||||||| |||| | ||||||||||||    
T  14514775 tatgtctctgtcctcaaatcaagcgagacaaaaacaaattgttcaa 14514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 686 - 757
Target Start/End: Original strand, 6921349 - 6921420
Alignment:
Q  686 tataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 757  Q
    ||||||||||| |||||||| |||||||||| |||||||| ||||||| |||||  ||||| ||||| ||||    
T  6921349 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 6921420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 675 - 752
Target Start/End: Original strand, 6935206 - 6935283
Alignment:
Q  675 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 752  Q
    |||||||| | ||||||||||| ||||||||  ||||||||| |||| ||| ||||||| |||||  ||||| |||||    
T  6935206 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataac 6935283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 33; Significance: 0.000000008; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 855 - 911
Target Start/End: Original strand, 13898 - 13954
Alignment:
Q  855 gtactgattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 911  Q
    ||||||||||||||||||||| |||||||| || ||||||||| |||| || |||||    
T  13898 gtactgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaac 13954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 855 - 911
Target Start/End: Original strand, 22733 - 22789
Alignment:
Q  855 gtactgattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 911  Q
    ||||||||||||||||||||| |||||||| || ||||||||| |||| || |||||    
T  22733 gtactgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaac 22789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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