View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_106 (Length: 232)
Name: NF11703_low_106
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_106 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4323550 - 4323781
Alignment:
| Q |
1 |
tgtcatttagtacaaatttgttatatgatatgataagcattaagcacatatattatagcattaagttgtttatccttaaaagcacaaaattaacctggaa |
100 |
Q |
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| T |
4323550 |
tgtcatttagtacaaatttgttatatgatatgataagcattaagcacatatattatagcattaagttgtttatccttaaaaacacaaaattaacctggaa |
4323649 |
T |
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| Q |
101 |
tttaggacaacaaatccagcaaggccagccgcaacacgaagctcatttctccactctaacgccatccatttctcctcatgtgaaattctgttcaatagat |
200 |
Q |
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| T |
4323650 |
tttaggacaacaaatccagcaaggccagccgcaacacgaagctcatttctccactctaacgccatccatttctcctcatgtgaaattctgttcaatagat |
4323749 |
T |
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| Q |
201 |
ttagaaatgatttaccaaactcaccagtttga |
232 |
Q |
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| T |
4323750 |
ttagaaatgatttaccaaactcaccagtttga |
4323781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 4357110 - 4357069
Alignment:
| Q |
91 |
taacctggaatttaggacaacaaatccagcaaggccagccgc |
132 |
Q |
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| T |
4357110 |
taacctggaatttaggacaacaaatccagcaagtccagccgc |
4357069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 4356965 - 4356906
Alignment:
| Q |
173 |
tcctcatgtgaaattctgttcaatagatttagaaatgatttaccaaactcaccagtttga |
232 |
Q |
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| T |
4356965 |
tcctcttgagaaattctgttcaaaagattttgaaatgatttaccaaagtcaccggtttga |
4356906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 4350509 - 4350461
Alignment:
| Q |
93 |
acctggaatttaggacaacaaatccagcaaggccagccgcaacacgaag |
141 |
Q |
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| T |
4350509 |
acctggaattcaggacaacaaatcctgcaaggccagcagcatcacgaag |
4350461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 4332944 - 4332803
Alignment:
| Q |
91 |
taacctggaatttaggacaacaaatccagcaaggccagccgcaacacgaagctcatttctccactctaacgccatccatttctcctcatgtgaaattctg |
190 |
Q |
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| T |
4332944 |
taacctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctg |
4332845 |
T |
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| Q |
191 |
ttcaatagatttagaaatgatttaccaaactcaccagtttga |
232 |
Q |
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| T |
4332844 |
ttcaaaagattttgaaaagctttaccaaagtcacctgtttga |
4332803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 4341260 - 4341228
Alignment:
| Q |
91 |
taacctggaatttaggacaacaaatccagcaag |
123 |
Q |
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| T |
4341260 |
taacctggaatttaagacaacaaatccagcaag |
4341228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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