View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_11 (Length: 622)
Name: NF11703_low_11
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 36526709 - 36526195
Alignment:
| Q |
1 |
aaactccatagctaattttctctgatccttatatcatttgtgtttctcaaattcagttttggcatcttggataagctcaaataattgtagaattaccctc |
100 |
Q |
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| T |
36526709 |
aaactccatagctaattttctccgatccttatatcatttgtgtttctcaaattcagttttggcatcttggataagctcaaacaattgtagaatgaccctc |
36526610 |
T |
|
| Q |
101 |
ctacatgttgaatttcttgatcattctctctttannnnnnnaagacttttttatgtgttgtataaactaaatacttttatctttaccttgatatttatgg |
200 |
Q |
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| T |
36526609 |
ctacatgttgaatttcttgatcattttctctttatttttttaagacttttttatgtgttgtataaaataaatacttttatctttaccttgatatttatgg |
36526510 |
T |
|
| Q |
201 |
catatatattcattgtagtaatctccnnnnnnnnnnnnggattcggtgttggtcaacatttatctcctaggagaacatatgcttcnnnnnnncttttata |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36526509 |
catatatattcattgtagtaatctccttttttttttttggattcggtgttggtcaacatttatctcctaggagaacatatgcttctttttttcttttata |
36526410 |
T |
|
| Q |
301 |
atagaacatatgtcattgattgtgagaataatttctcatgtgtttttctctctctcttagacatgctgatcctttgcagttgagttatgagcttcaaatg |
400 |
Q |
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| T |
36526409 |
atagaacatatgccattgattgtgagaataatttctcatgttttttttttttttacttagacatgctgatcctttgcagttgagttatgagcttcaaatg |
36526310 |
T |
|
| Q |
401 |
gtagcaacactgtggcaacgtaaagatttgattgatcctagaatctaacaatacaggttattttttggatgtcgttagtttgatatttcctcttgcttta |
500 |
Q |
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| T |
36526309 |
gtagcaac--tgtggcaacgtaaagatttgattgatcctagaatctaacaatacaggttattttttggatgtcgttagtttggtatttcctcttgcttta |
36526212 |
T |
|
| Q |
501 |
gtcatagtaattacatg |
517 |
Q |
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| T |
36526211 |
gtcatagtaattacatg |
36526195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 558 - 612
Target Start/End: Complemental strand, 36526154 - 36526100
Alignment:
| Q |
558 |
acaggaatagcattgctgcaagtatggtattgttggtaagaattgctttcctttg |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36526154 |
acaggaatagcattgctgcaagtatggtattgttggtaagaattgctttcctttg |
36526100 |
T |
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