View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_112 (Length: 223)

Name: NF11703_low_112
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_112
NF11703_low_112
[»] chr5 (4 HSPs)
chr5 (1-206)||(42599025-42599229)
chr5 (132-204)||(42598285-42598357)
chr5 (124-163)||(42598219-42598258)
chr5 (124-163)||(42728376-42728415)
[»] chr3 (1 HSPs)
chr3 (156-206)||(16067932-16067982)
[»] chr8 (1 HSPs)
chr8 (161-206)||(29636424-29636469)
[»] chr1 (2 HSPs)
chr1 (161-206)||(19072396-19072441)
chr1 (161-206)||(19120286-19120331)
[»] chr7 (2 HSPs)
chr7 (162-206)||(13904470-13904514)
chr7 (163-207)||(43450808-43450852)
[»] chr2 (1 HSPs)
chr2 (160-207)||(35657429-35657476)
[»] chr6 (3 HSPs)
chr6 (161-206)||(21801930-21801975)
chr6 (162-206)||(10702263-10702307)
chr6 (158-206)||(32114445-32114493)
[»] chr4 (1 HSPs)
chr4 (158-206)||(36687240-36687289)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42599229 - 42599025
Alignment:
Q  1 tcaagctccccattgtctattcgtatatatcgtggacctctgcaaacagttggtgggcaaccaccatatgctatggtttgcagacctttaagaatatgtg 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42599229 tcaagctccccattgtctattc-tatatatcgtggacctctgcaaacagttggtgggcaaccaccatatgctatggtttgcagacctttaagaatatgtg 42599131  T
Q  101 cgaatacacaattcgttactgttggtttgtggtggtttgtaagttagtggttgatataaaaaagagtaaattacaatcattttccctcaaagatgtttga 200  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||  |||||||    
T  42599130 cgaatacgcaattcgttactcttggtttgtggtggtttgtaagttagtggttgatataaaaaagagtaaattacaatcccctcccctcaaaactgtttga 42599031  T
Q  201 attaca 206  Q
    ||||||    
T  42599030 attaca 42599025  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 42598285 - 42598357
Alignment:
Q  132 gtggtttgtaagttagtggttgatataaaaaagagtaaattacaatcattttccctcaaagatgtttgaatta 204  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||   ||||||||||| || ||||||||    
T  42598285 gtggtttgtacgttcgtggttgatataaaaaagagtaaattacactctccttccctcaaagctgcttgaatta 42598357  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 42598258 - 42598219
Alignment:
Q  124 ggtttgtggtggtttgtaagttagtggttgatataaaaaa 163  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  42598258 ggtttgtggtggtttgtaggttagtggttgatataaaaaa 42598219  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 42728376 - 42728415
Alignment:
Q  124 ggtttgtggtggtttgtaagttagtggttgatataaaaaa 163  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  42728376 ggttagtggtggtttgtaggttagtggttgatataaaaaa 42728415  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 16067982 - 16067932
Alignment:
Q  156 ataaaaaagagtaaattacaatcattttccctcaaagatgtttgaattaca 206  Q
    |||||||||||||||||||| || |||||||||||||||| ||||||||||    
T  16067982 ataaaaaagagtaaattacactccttttccctcaaagatgcttgaattaca 16067932  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 29636469 - 29636424
Alignment:
Q  161 aaagagtaaattacaatcattttccctcaaagatgtttgaattaca 206  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||    
T  29636469 aaagagtaaattacaatcctcttccctcaaagatgcttgaattaca 29636424  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 19072441 - 19072396
Alignment:
Q  161 aaagagtaaattacaatcattttccctcaaagatgtttgaattaca 206  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||    
T  19072441 aaagagtaaattacactcatctcccctcaaagatgtttgaattaca 19072396  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 19120331 - 19120286
Alignment:
Q  161 aaagagtaaattacaatcattttccctcaaagatgtttgaattaca 206  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||    
T  19120331 aaagagtaaattacactcatctcccctcaaagatgtttgaattaca 19120286  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 13904514 - 13904470
Alignment:
Q  162 aagagtaaattacaatcattttccctcaaagatgtttgaattaca 206  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||    
T  13904514 aagagtaaattacactcatcttccatcaaagatgtttgaattaca 13904470  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 43450852 - 43450808
Alignment:
Q  163 agagtaaattacaatcattttccctcaaagatgtttgaattacat 207  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||    
T  43450852 agagtaaattacatttcttttccctcaaagatgtttgaattacat 43450808  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 35657429 - 35657476
Alignment:
Q  160 aaaagagtaaattacaatcattttccctcaaagatgtttgaattacat 207  Q
    |||||||||||||||| || | |||||||||||||| |||||||||||    
T  35657429 aaaagagtaaattacattcttcttccctcaaagatgcttgaattacat 35657476  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 21801930 - 21801975
Alignment:
Q  161 aaagagtaaattacaatcattttccctcaaagatgtttgaattaca 206  Q
    ||||||||||||||| || | |||||||||||||| ||||||||||    
T  21801930 aaagagtaaattacactcctcttccctcaaagatgcttgaattaca 21801975  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 10702263 - 10702307
Alignment:
Q  162 aagagtaaattacaatcattttccctcaaagatgtttgaattaca 206  Q
    |||||||||||||| |||| | |||||||||||| ||||||||||    
T  10702263 aagagtaaattacactcatctcccctcaaagatgcttgaattaca 10702307  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 32114493 - 32114445
Alignment:
Q  158 aaaaaagagtaaattacaatcattttccctcaaagatgtttgaattaca 206  Q
    |||||||||||||||||| ||   |||||||||||||| ||||||||||    
T  32114493 aaaaaagagtaaattacactctccttccctcaaagatgcttgaattaca 32114445  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 36687240 - 36687289
Alignment:
Q  158 aaaaaagagtaaattacaatcat-tttccctcaaagatgtttgaattaca 206  Q
    |||||||||||||||||| || | ||||||||||||||| ||||||||||    
T  36687240 aaaaaagagtaaattacactcctatttccctcaaagatgcttgaattaca 36687289  T

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