View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_low_113 (Length: 220)
Name: NF11703_low_113
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_113 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 21116088 - 21115915
Alignment:
| Q |
29 |
aataataataatgaaatgaataccttgaaactgctctgggcttggttcctttgtggcagggataatagtaattgtgaatgaaaggggttcacgttgagtc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21116088 |
aataataataatgaaatgaataccttgaaactgctctaggcttggttcctttggggctgggataatagtaattgtgaatgaaagtggttcacgttgagtc |
21115989 |
T |
|
| Q |
129 |
atctcaaatttacatgcatcaccaattttcaagtcatgttcctttgtaaatgacttccaaccaacctgcattac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21115988 |
atctcaaatttacatgcatcaccaattttcaagtcatgttcctttgtaaatgacttccaaccaacctgcattac |
21115915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 12929567 - 12929742
Alignment:
| Q |
25 |
caaaaataataataatgaaatgaataccttgaaactgctctgggcttggttcctttgtggcagggataatagtaattgtgaatgaaaggggttcacgttg |
124 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
12929567 |
caaaaataataataatgaaga-aataccttgaaactgctctgggcatggttcctctgtggctgggataataataattgtgaatgaaagtggttcgcgttg |
12929665 |
T |
|
| Q |
125 |
agtcatctcaaatttacatgcatcaccaattttcaagtcatgttcctttgtaaatgacttccaaccaacctgcatta |
201 |
Q |
| |
|
|| |||||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
12929666 |
agccatctcaaatttacatacatcaccaactttcaagtcatgttcctttgaaaatgatttccaaccaacctgcatta |
12929742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 12910235 - 12910067
Alignment:
| Q |
23 |
ttcaaaaataataataatgaaatgaataccttgaaactgctctgggcttggttcctttgtggcagggataatagtaattgtgaatgaaaggggttcacgt |
122 |
Q |
| |
|
|||||||| || |||||| ||| |||||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||| |||| ||| |
|
|
| T |
12910235 |
ttcaaaaacaacaataataaaagcaataccttgaaacttctccgggcctggttcctttgtggttgggataatagtaattgtgaatgaaagtggttagcgt |
12910136 |
T |
|
| Q |
123 |
tgagtcatctcaaatttacatgcatcaccaattttcaagtcatgttcctttgtaaatgacttccaacca |
191 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
12910135 |
tgagtcatctcaaatttacatacatcaccaactttcaactcatgttcctttgaaaatgacttccaacca |
12910067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 12920511 - 12920615
Alignment:
| Q |
87 |
gggataatagtaattgtgaatgaaaggggttcacgttgagtcatctcaaatttacatgcatcaccaattttcaagtcatgttcctttgtaaatgacttcc |
186 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||||||||||||||||| || |||||||| || ||||| | |||||| | ||||||||||| |
|
|
| T |
12920511 |
gggataatagtaatagtgaatgaaagtggttttcgttgagtcatctcaaatttgaatacatcaccagcttgcaagttacgttcctgtacaaatgacttcc |
12920610 |
T |
|
| Q |
187 |
aacca |
191 |
Q |
| |
|
||||| |
|
|
| T |
12920611 |
aacca |
12920615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 12991441 - 12991379
Alignment:
| Q |
91 |
taatagtaattgtgaatgaaaggggttcacgttgagtcatctcaaatttacatgcatcaccaa |
153 |
Q |
| |
|
||||||||| ||||||||||| ||||| | |||||||||| ||||||||||| ||||||||| |
|
|
| T |
12991441 |
taatagtaacggtgaatgaaagtggttctctttgagtcatcacaaatttacattcatcaccaa |
12991379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 12995599 - 12995537
Alignment:
| Q |
91 |
taatagtaattgtgaatgaaaggggttcacgttgagtcatctcaaatttacatgcatcaccaa |
153 |
Q |
| |
|
|||||||||| |||||| |||| ||||| | |||||||||| ||||||||||| |||||||| |
|
|
| T |
12995599 |
taatagtaatagtgaataaaagtggttctctttgagtcatcacaaatttacatttatcaccaa |
12995537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 19757265 - 19757203
Alignment:
| Q |
91 |
taatagtaattgtgaatgaaaggggttcacgttgagtcatctcaaatttacatgcatcaccaa |
153 |
Q |
| |
|
||||||| || ||||||||||| |||| | ||||||||||| ||||||||||| |||||||| |
|
|
| T |
19757265 |
taatagttatggtgaatgaaagtggttgaagttgagtcatcacaaatttacatttatcaccaa |
19757203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 12918664 - 12918721
Alignment:
| Q |
25 |
caaaaataataataatgaaatgaataccttgaaactgctctgggcttggttcctttgt |
82 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| | ||| |||| |||||||||||| |
|
|
| T |
12918664 |
caaaaacaataataatgaaagaaataccttgaaatttctccgggcatggttcctttgt |
12918721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University