View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_12 (Length: 611)
Name: NF11703_low_12
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 243 - 346
Target Start/End: Original strand, 22099157 - 22099261
Alignment:
| Q |
243 |
taaatcataaaa-gagagaagcacgtgagtcttctactcttcttccttagaacaatcaaacccaaaaattatcaatatttttcaatttcacacttccttt |
341 |
Q |
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| T |
22099157 |
taaatcataaaaagagagaagcacgcgagtcttctactcttcttcctcagaacaatctaaccaaaaaattatcaatatttttcaatttcacactcccttt |
22099256 |
T |
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| Q |
342 |
caaat |
346 |
Q |
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||||| |
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| T |
22099257 |
caaat |
22099261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 22098907 - 22098977
Alignment:
| Q |
125 |
tgtcgagataattaaaaagcttaagcacaattttcacccactaacttttaaaatgtagagattttggcctc |
195 |
Q |
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| T |
22098907 |
tgtcgagataattaaaaagcttaaacacaattttcaccccctaacttttaaaatgtagagattttgacctc |
22098977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 22098802 - 22098839
Alignment:
| Q |
24 |
tgttgatatgtggttccaccttccagatgttgtttgcc |
61 |
Q |
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| T |
22098802 |
tgttgatatgtggttccaccttccagatgttgtttgcc |
22098839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 26831253 - 26831178
Alignment:
| Q |
254 |
agagagaagcacgtgagtcttctactcttcttccttagaacaatcaaacccaaaaa--ttatcaatatttttcaatt |
328 |
Q |
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|||| |||||||||||||||| | |||||||||| | |||| ||||||||||||| ||||||||||||||||||| |
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| T |
26831253 |
agagggaagcacgtgagtctttt-ctcttcttccccaaaacattcaaacccaaaaaaattatcaatatttttcaatt |
26831178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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