View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_120 (Length: 205)
Name: NF11703_low_120
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_120 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 15533999 - 15533801
Alignment:
| Q |
1 |
ttcatcttcgaccgccatattgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatttgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15533999 |
ttcatcttcgaccgccatattgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatttgga |
15533900 |
T |
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| Q |
101 |
ttgatcacattattcatctccataacaagcatgatgatagcacttagcagttccttcttcataacatactaccatggttcgatgtggattcctagttgc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15533899 |
ttgatcacattattcatctccataacaagcatgatgatagcacttagcagttccttcttcataacatactaccatggttcgatgtggattcctagttgc |
15533801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 15517486 - 15517288
Alignment:
| Q |
1 |
ttcatcttcgaccgccatattgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatttgga |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |
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| T |
15517486 |
ttcatcttcgacagccatattgattttcttgtctattcttgtctcgcgttatggagagcgtgacttctataaatcactacctttaaagctaatatttgga |
15517387 |
T |
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| Q |
101 |
ttgatcacattattcatctccataacaagcatgatgatagcacttagcagttccttcttcataacatactaccatggttcgatgtggattcctagttgc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
15517386 |
ttgatcacattattcatctccataacaagcatgatggtagcacttagcagttccttcttcataaccttctaccatggttcgatgtggattcctagttgc |
15517288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 15493655 - 15493462
Alignment:
| Q |
6 |
cttcgaccgccatattgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatttggattgat |
105 |
Q |
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|||||||||| |||||||| ||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15493655 |
cttcgaccgcgatattgatattcttgtctattcttgtatcgcgttatcgagagtatgacttctataaatcactgcctttaaagctaatatttggattgat |
15493556 |
T |
|
| Q |
106 |
cacattattcatctccataacaagcatgatgatagcacttagcagttccttcttcataacatactaccatggttcgatgtggattcctagttgc |
199 |
Q |
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||||||||||||||||||||||||||||||| ||||| | || | |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15493555 |
cacattattcatctccataacaagcatgatggtagcattaagtacttccttcttcataatatactaccatggttcgatgtggattcctagttgc |
15493462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 15591963 - 15591784
Alignment:
| Q |
20 |
ttgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatttggattgatcacattattcatct |
119 |
Q |
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||||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15591963 |
ttgatattcttgtctattcttgtctcgcggtatggagagtatgacttctataaatcactgccttcaaagctaatatttggattgatcacattattcatct |
15591864 |
T |
|
| Q |
120 |
ccataacaagcatgatgatagcacttagcagttccttcttcataacatactaccatggttcgatgtggattcctagttgc |
199 |
Q |
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|
||||||||||||||||| ||||| |||| |||||||||||||||| ||||||||||| |||| ||||| ||||||||||| |
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| T |
15591863 |
ccataacaagcatgatggtagcatttagtagttccttcttcataatatactaccatgcttcggtgtgggttcctagttgc |
15591784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 15654451 - 15654260
Alignment:
| Q |
2 |
tcatcttcgaccgccatattgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatttggat |
101 |
Q |
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|||||| |||| || |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||| |
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| T |
15654451 |
tcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaatatgtggat |
15654352 |
T |
|
| Q |
102 |
tgatcacattattcatctccataacaagcatgatgatagcacttagcagttccttcttcataacatactaccatggttcgatgtggattcct |
193 |
Q |
| |
|
|| |||||||||| |||||| |||||||||||||| ||||| | || | | |||||||||| |||||||||||||| ||||||| ||||| |
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| T |
15654351 |
tggtcacattatttatctccgtaacaagcatgatggtagcattaagtactaacttcttcatagtatactaccatggtttgatgtgggttcct |
15654260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 15645399 - 15645208
Alignment:
| Q |
2 |
tcatcttcgaccgccatattgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatttggat |
101 |
Q |
| |
|
|||||| |||| || |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||| |
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| T |
15645399 |
tcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaatatgtggat |
15645300 |
T |
|
| Q |
102 |
tgatcacattattcatctccataacaagcatgatgatagcacttagcagttccttcttcataacatactaccatggttcgatgtggattcct |
193 |
Q |
| |
|
|| |||||||||| |||||| |||||||||||||| ||||| | || | | |||||| ||| ||||||||||||||||| |||| ||||| |
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| T |
15645299 |
tggtcacattatttatctccgtaacaagcatgatggtagcattaagtactaacttctttatagtatactaccatggttcgacgtgggttcct |
15645208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 15624774 - 15624594
Alignment:
| Q |
2 |
tcatcttcgaccgccatattgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatttggat |
101 |
Q |
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|||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||| |||||||| ||||||| ||||| |
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| T |
15624774 |
tcatctgcgaccgcgatattgattttcttgtcgattcttgtctcacgttatggagagtacgacttctataaatcactacctttaaaactaatatctggat |
15624675 |
T |
|
| Q |
102 |
tgatcacattattcatctccataacaagcatgatgatagcacttagcagttccttcttcataacatactaccatggttcga |
182 |
Q |
| |
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||||||||||| |||||| ||||||||||||| ||||| | || | | ||||||||||| ||||| ||||||||||| |
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| T |
15624674 |
tgatcacattagctatctccgcaacaagcatgatggtagcattaagtactaacttcttcataatatacttccatggttcga |
15624594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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