View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_121 (Length: 205)
Name: NF11703_low_121
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_121 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21116828 - 21116624
Alignment:
| Q |
1 |
tctccaatcttcacattgcattctctcacaaattctgaccaacctttagtgaaccacccataatcaaggtattgattataactcacctctacaaaccatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
21116828 |
tctccaatcttcacattgcattctctcacaaattctggccaacctttagtgaaccacccataatcgaggtattgattataactcacctctacaaaccaag |
21116729 |
T |
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| Q |
101 |
ttccttcccctactttcaactccactgaatctccactaaatatattatgcctcttcaacagacttggcagtacaaccagctgcatatacaagaacaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21116728 |
ttccttcccctactttcaactccactgaatctccactaaatatattatgcctcttcaacagacttggcagtacaatcagctgcatatacaagaacaaatt |
21116629 |
T |
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| Q |
201 |
aaaaa |
205 |
Q |
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||||| |
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| T |
21116628 |
aaaaa |
21116624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 12912185 - 12911980
Alignment:
| Q |
1 |
tctccaatcttcacattgcattctctcacaaattctgaccaacctttagtgaaccacccataatcaaggtattgattataactcacctctacaaaccatg |
100 |
Q |
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|||||| |||| || ||||| ||||||||||||||| |||||||||||||||||| |||| || || | || |||||||||||| ||||||||||||| |
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| T |
12912185 |
tctccagtctttactttgcaatctctcacaaattcttgccaacctttagtgaaccaaccatggtcgagatgttcattataactcacatctacaaaccatg |
12912086 |
T |
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| Q |
101 |
ttccttcccctactttcaactccactgaatctccactaaatatattatgcctcttcaacag---acttggcagtacaaccagctgcatatacaagaacaa |
197 |
Q |
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| T |
12912085 |
ttccttcccctactctcaactccactgaatttccactaaatataccatgcttcttcaacagctcacttggtagtacaaccaactgcatatatatgaacaa |
12911986 |
T |
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| Q |
198 |
attaaa |
203 |
Q |
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|||||| |
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| T |
12911985 |
attaaa |
12911980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 12901958 - 12902150
Alignment:
| Q |
16 |
ttgcattctctcacaaattctgaccaacctttagtgaaccacccataatcaaggtattgattataactcacctctacaaaccatgttccttcccctactt |
115 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||| || || | || || |||||||||||||||||||||||||||||||||| | |
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| T |
12901958 |
ttgcattctctcacaaattcttgccagcctttagtgaaccacccatagtcgagatgttcatcctaactcacctctacaaaccatgttccttcccctaact |
12902057 |
T |
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| Q |
116 |
tcaactccactgaatctccactaaatatattatgcctcttcaacag---acttggcagtacaaccagctgcatatacaagaacaaattaaaaa |
205 |
Q |
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|||||||||| |||| |||||||||||||||||| || || ||||| |||||| |||||||||| ||||||||| |||||||||||||||| |
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| T |
12902058 |
tcaactccaccgaatttccactaaatatattatgtctttttaacagctcacttggtagtacaaccaactgcatatataagaacaaattaaaaa |
12902150 |
T |
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