View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_16 (Length: 559)
Name: NF11703_low_16
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 19171842 - 19171301
Alignment:
| Q |
1 |
aaacaggacaactttcaattactttttgtttgattctcaattcttgctgaaaataaaacaaaatcaaaacgtgacgttaggtgcaattccaatttcccaa |
100 |
Q |
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| T |
19171842 |
aaacaggacaactttcaattactttttgtttgattctcaattcttgctgaaaataaaacaaaatcaaaacgtgacgttaggtgcaattccaatttcccaa |
19171743 |
T |
|
| Q |
101 |
acctaacaaaccacaccaactttttctaaacttaattagtaaaataatgaaatgtgcacgcaatctattcaccgacctgagccaaagagttcaagttgtg |
200 |
Q |
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| T |
19171742 |
acctaacaaaccacaccaactttttctaagcttaattagtaaaataatgaaatgtgcacgcaatctattcaccgacctgagccaaagagttcaagttgtg |
19171643 |
T |
|
| Q |
201 |
cagtattctcctgatcaataacatcaagaaaaacaggatcaacagtaatatgactattaactctcactttaaacttatggtcccaccacaaaactctagc |
300 |
Q |
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| T |
19171642 |
cagtattctcctgatcaataacatcaagaaaaacaggatcaacagtaatatgactattaactctcactttaaacttatggtcccaccacaaaactctagc |
19171543 |
T |
|
| Q |
301 |
ggtgccagcaatatcaacagccgcatcaagaaccatctcccttttcgccacgtcagacattactcggctcgcgtgtttcgcgagccgaagagctttaagc |
400 |
Q |
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| T |
19171542 |
ggtgccagcaatatcaacagctgcatcaagaaccatctcccttttcgccacgtcagacattactcggctcgcgtgtttcgcgagccgaagagctttaagc |
19171443 |
T |
|
| Q |
401 |
cgagccggaagtctcagtaactgacatgacctcggtggctgagacccggcttggaccggagctgaaccgaggagagaaccttcgtagaaaattgacatgg |
500 |
Q |
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| T |
19171442 |
cgggcaggaagtctcagtaactgacatgacctcggtggctgagacccggcttggaccggagctgaaccgaggagagaaccttcgtagaaaattgacatgg |
19171343 |
T |
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| Q |
501 |
ttgttgatgagtagttaattggggctatgtttggattggtga |
542 |
Q |
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| T |
19171342 |
ttgttgatgagtagttaattggagctatgtttggattggtga |
19171301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 43762696 - 43762641
Alignment:
| Q |
218 |
ataacatcaagaaaaacaggatcaacagtaatatgactattaactctcactttaaa |
273 |
Q |
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||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |
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| T |
43762696 |
ataacatcaagaaaaacaggatcaacagtaacatgaatatttactctcactttaaa |
43762641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43762884 - 43762813
Alignment:
| Q |
1 |
aaacaggacaactttcaatt-actttttgtttgattctcaattcttg-ctgaaaataaaacaaaatcaaaac |
70 |
Q |
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||||||| |||||||||||| ||||||| ||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
43762884 |
aaacagggcaactttcaatttactttttctttaattctcaattctgaactgaaaataaaagaaaatcaaaac |
43762813 |
T |
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