View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_19 (Length: 550)
Name: NF11703_low_19
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 527
Target Start/End: Original strand, 52809881 - 52810396
Alignment:
| Q |
14 |
agacatgctggctgctggcaaatgaaattctccgatgttagagttcatcacatccccttgctcaacaaatagtgatgccatttgtgtaaatacaacagag |
113 |
Q |
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| T |
52809881 |
agacatgctggctgctggcaaatgaaattctccgatgttagagttcatcacatccccttgctcaacaaatagtgatgccatttgtgtaaatacaacagag |
52809980 |
T |
|
| Q |
114 |
taacaaatggtgcatagccaaattggaagcattcttaacacacattttgtttcctcaacttgagtcactgtgcaaagcctccatggattgtttccaatct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52809981 |
taacaaatggtgcatagccaaattggaagcattcttaacacgcattttgtttcctcaacttgagtcactgtgcaaagcttccatggattgtttccaatct |
52810080 |
T |
|
| Q |
214 |
gctcatcatcattctttgtaatggttgcagctttgtccatcaatctgcacccccatggtcaacatcaacaatcacatatataattagtttcaagtttcat |
313 |
Q |
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| T |
52810081 |
gctcatcatcattctttgtaatggttgcagctttgtccatcaatctgcacccccatggtcaacatcaacaatcacatatataattattttcaagtttcat |
52810180 |
T |
|
| Q |
314 |
aatattttaattaattaaagtagttagtacttgataatcattttacaatccgtctcttgagataggttaaagggtaaaacccttaccaatgatcatttta |
413 |
Q |
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| T |
52810181 |
gatattttaattaattaaagtagttagtac-tgataatcattttacaatccgtctcttgagataggttaaagggtaaaacccttaccaacgatcatttta |
52810279 |
T |
|
| Q |
414 |
caattgtaacgtaggagatttatactccgtttcttgagatgggttaaagggtaaaactcttaccaatgagttgaaggtcaaaa---tattattaattaaa |
510 |
Q |
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| T |
52810280 |
caattgtaacgtaggagatttatactccgtttcttgagatgggttaaagggtaaaactcttaccaatgagttgaaggtcaaaatattattattaattaaa |
52810379 |
T |
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| Q |
511 |
ttcatctaatgtttggg |
527 |
Q |
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| T |
52810380 |
ttcatctaatgtttggg |
52810396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 397544 - 397368
Alignment:
| Q |
14 |
agacatgctggctgctggcaaatgaaattctccgatgttagagttcatcacatccccttgctcaacaaatagtgatgccatttgtgtaaatacaacagag |
113 |
Q |
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| T |
397544 |
agacatggttgctgctggcaagtgaaattttcctaccttgttgttcattacatcaccttgttcgacaaaaagagaagccatttgtgtgaatacaacagag |
397445 |
T |
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| Q |
114 |
taacaaatggtgcatagccaaattggaagcattcttaacacacattttgtttcctcaacttgagtcactgtgcaaag |
190 |
Q |
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| T |
397444 |
taaataatagtgcacagccaaactggtatcattctcaacacacatttggcttcctcaacttgagttacagtgcaaag |
397368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 3803290 - 3803423
Alignment:
| Q |
64 |
catccccttgctcaacaaatagtgatgccatttgtgtaaatacaacagagtaacaaatggtgcatagccaaattggaagcattcttaacacacattttgt |
163 |
Q |
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|||| ||||| || ||||| || || ||||||||||||||||||||||||||| ||| ||||||||||||| || | |||||| ||||||||||| | |
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| T |
3803290 |
catcgccttgttcgacaaaaagagaagccatttgtgtaaatacaacagagtaaataatagtgcatagccaaaccggtatcattctcaacacacatttggc |
3803389 |
T |
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| Q |
164 |
ttcctcaacttgagtcactgtgcaaagcctccat |
197 |
Q |
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|||||| |||||||| || || ||||||| |||| |
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| T |
3803390 |
ttcctctacttgagttacagtacaaagccgccat |
3803423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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