View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_low_22 (Length: 511)
Name: NF11703_low_22
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Complemental strand, 46357686 - 46357204
Alignment:
| Q |
19 |
ttatttccatatttaggaatcattatttgtaaatggaaattaaattctgtttggcatcaaatcttttaaactacttctgtgaactcaataaaaaatgtat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46357686 |
ttatttccatatttaggaatcattatttgtaaatggaaattaaattctgtttggcatcaaatcttttaaactacttctgtgaactcaataaaaaatgtat |
46357587 |
T |
|
| Q |
119 |
ttaacgatgctcatattcacctatatatctacatcnnnnnnncttcagaaaaataatattcattcaaatgataaaattttgaatgatcatgtgttgcgac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46357586 |
ttaacgatgctcatattcacctatatatctacatctttttttcttcagaaaaataatatttattcaaatgataaaattttgaatgatcatgtgttgcgac |
46357487 |
T |
|
| Q |
219 |
actcccatccacattttaaatcaatattagtaactaataaaagtcaagaataagctaggatacacacaaacagtccaaaaaccaaggagaaattaacgaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46357486 |
actcccatccacattttaaatcaatattagtaactaataaa-gtcaagaataagctaggatacacacaaacagtccaaaaaccaaggagaaattaacaaa |
46357388 |
T |
|
| Q |
319 |
tcaaaaccttaatcctaaaaacccaacaaacttctttcaaatacgatcaatgggcaactgctataaaaccatctacctttgnnnnnnntaattgatattc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
46357387 |
tcaaaaccttaatcctaaaaacccaacaaacttctttcaaatacgatcaatgggcaactgctataaaaccatctacc-ttgaaaaaaaaaattgatattc |
46357289 |
T |
|
| Q |
419 |
attcatataacgtgaccaatacaactacatgttgagaagtcttttgtgacgccgcagacctcttaccccaagacaagttcatctc |
503 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
46357288 |
attcatataacgtgaccaatataactacatgttgagaagtcttttgtgacgccgtagacctcttaccccaagacaaattcatctc |
46357204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University