View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_24 (Length: 498)
Name: NF11703_low_24
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 47117229 - 47116765
Alignment:
| Q |
19 |
caagtcgttgagcagcggcttttgtggcattgttttgtgttctcccgatgttgttcatggcagaacctgtggaacctgcacgagcatgtcggttcaatgg |
118 |
Q |
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| T |
47117229 |
caagtcgttgagcagcggcttttgtggcattgttttgtgttctcccgatgttgttcatggcagaacctgtggaacctgcacgagcatgtcgattcaatgg |
47117130 |
T |
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| Q |
119 |
cgacatcatcaccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaa |
218 |
Q |
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| T |
47117129 |
cgacatcatcaccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaa |
47117030 |
T |
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| Q |
219 |
aaataatcgttaaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctcct |
318 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47117029 |
aaataatcgttaaaaggtga----tcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctcct |
47116934 |
T |
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| Q |
319 |
tgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47116933 |
tgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtc |
47116834 |
T |
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| Q |
419 |
agnnnnnnngagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtgatgtccatct |
487 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47116833 |
agaaaaaaagagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatct |
47116765 |
T |
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