View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_25 (Length: 494)
Name: NF11703_low_25
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 1323660 - 1324101
Alignment:
| Q |
17 |
agagtggagatagagattgtattgacttgtgaaatttttggtttatggaaatatttattataccttgatattaccagcaactttgatagcatctacaatt |
116 |
Q |
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| T |
1323660 |
agagtggagatagagattctattgacttgtgaaatttttggtttatagaaatatttattataccttgatattaccagcaactttgatagcatctacaatt |
1323759 |
T |
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| Q |
117 |
ttgagttgctccatcacttgtggatatggaaaggtacatatcacaatgtctgctacttttatgactctaacaatctggtcatgttcaagttctccctgca |
216 |
Q |
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| T |
1323760 |
ttgagttgctccatcacttgcggatatggaaaggtacatatcacaatgtctgcttcttttatgactctaacaatctggtcatgttcaagttctccctgca |
1323859 |
T |
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| Q |
217 |
attaattattttttatatttatcaagaaattaattaaaatgacttgtttattttcattgcatatactacatagagagaaaaataactattaagccttaac |
316 |
Q |
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| T |
1323860 |
attaattattttttatatttatcaagaaattaattaaaatgacttgtttattttcattgcatatactacatagagagaaaaataactattaagccttaac |
1323959 |
T |
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| Q |
317 |
caagtggttgagaataaatgattaatatactttaattaatgacgaatcatttaaaagaatttgagtacaagttctagttgaaattattatcagctagact |
416 |
Q |
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| T |
1323960 |
caagtggttgaaaataaatgattaatatactttaattaatgatgaatcattcaaaagaatctgagtataagttctagttgaaattattatcagctagact |
1324059 |
T |
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| Q |
417 |
ttaattagtcaactcttgaccgaactttgaattttcacggtt |
458 |
Q |
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| T |
1324060 |
ttaattagtcaactcttgaccgaactttggattttcacggtt |
1324101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 78 - 251
Target Start/End: Original strand, 1338460 - 1338637
Alignment:
| Q |
78 |
accttgatattaccagcaactttgatagcatctacaattttgagttgctccatcacttgtggatatggaaaggtacatatcacaatgtctgctactttta |
177 |
Q |
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| T |
1338460 |
accttgatattgccagcaactttaatagcatctataattttgagttgctccaacacttgtgggtatggaaaggtacatatcacaatgtctacttgcttaa |
1338559 |
T |
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| Q |
178 |
tgactctaacaatctggtcatgttcaagttctccctgcaattaattattttt----tatatttatcaagaaattaatt |
251 |
Q |
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| T |
1338560 |
tcactttcacaatctggtcatgctcaagttctccctgcaatcaattattgttgatatatacttatcaagaaattaatt |
1338637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 1262090 - 1261938
Alignment:
| Q |
77 |
taccttgatattaccagcaactttgatagcatctacaattttgagttgctccatcacttgtggatatggaaaggtacatatcacaatgtctgctactttt |
176 |
Q |
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|||||| ||||||||||||||||||| ||| || | |||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||| ||| |
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| T |
1262090 |
taccttaatattaccagcaactttgacagcttcaataattttgagttgctccatcacttgaggataagcaaaagtacatatcacaatgtctgcttgttta |
1261991 |
T |
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| Q |
177 |
atgactctaacaatctggtcatgttcaagttctccctgcaattaattattttt |
229 |
Q |
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|| ||| ||||| || | ||| |||||||||||||||| ||| | |||||| |
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| T |
1261990 |
ataactgccacaatttgattatgctcaagttctccctgcatttattaattttt |
1261938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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