View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_26 (Length: 491)
Name: NF11703_low_26
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 480
Target Start/End: Original strand, 34797134 - 34797598
Alignment:
| Q |
16 |
ttttggtcggctgagacttatgatgtaaagcttccttggaaggacttggctgtaggccgtgtttgtcatggacgtggtcgtgggtgggattccctaagaa |
115 |
Q |
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| T |
34797134 |
ttttggtcggctgagacttatgatgtaaagcttccttggaaggacttggctgtaggccgtgtttgtcatggacgtggtcgtgggtgggattccctaagaa |
34797233 |
T |
|
| Q |
116 |
gaaatgaaagcatgcctgaacatctggtggacgcgtgtaagaggtgtgctcgagcatttataagggctgaatttcaggtatgctttgttccacctataac |
215 |
Q |
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| T |
34797234 |
gaaatgaaagcatgcctgaacatctagtggacgcgtgtaagaggtgtgctcgagcatttataagggccgaatttcaggtatgctttgttccacctataac |
34797333 |
T |
|
| Q |
216 |
tattcaggcaaattttaggtatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactagattaaatgaatgctttgattttata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34797334 |
tattcaggcaaattttaggtatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactatattaaatgaatgctttgattttata |
34797433 |
T |
|
| Q |
316 |
tcaattataagatagaaggtgatgctatcnnnnnnntttatcacctcttgcctactaaattaaacacaaatgaaactaacattggtgcgataagnnnnnn |
415 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34797434 |
tcaattataagatagaaggtgatgctcacaaaaaaatttatcacctcttgcctactaaattaaacacaaatgaaactaacattggtgcgataagaaaaaa |
34797533 |
T |
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| Q |
416 |
nnccataggttatgtatttattgcacctataaactgaggaagggagaaaaagcataattgttctt |
480 |
Q |
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| T |
34797534 |
aaccataggttatgtatttattgcacctataaactgaggaagggagaaaaagcataattgttctt |
34797598 |
T |
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