View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_27 (Length: 473)
Name: NF11703_low_27
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 213 - 455
Target Start/End: Complemental strand, 8847573 - 8847332
Alignment:
| Q |
213 |
cttaactaaacggcctccaatgtatgattgtgtgaatgctttgatttgatggcagcagcaaatccaggtttgtaagtgattatccttcttcgctttacaa |
312 |
Q |
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| T |
8847573 |
cttaactaaacggcctccaatgtatgattgtgtgaatgctttgatttgatggcagcagcaaatccaggtttgtaagtgattatccttcttcgctttacaa |
8847474 |
T |
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| Q |
313 |
acaacaagaatttatgatcagattctcaactaaactcaacgaacaattcttgttattcttcacttttcatttttgaaatactataaaataaacaaaattt |
412 |
Q |
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| T |
8847473 |
acaacaagaatttatgatcagattctcaactaaactcaacgaacaattcttgttattc-tcacttttcatttttgaaatactataaaataaacaaaattt |
8847375 |
T |
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| Q |
413 |
tgaaactcatgttccacgagtacatgaaatatatcaatcaagc |
455 |
Q |
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| T |
8847374 |
tgaaactcatgttccacgagtatatgaaatatatcaatcaagc |
8847332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 8847768 - 8847624
Alignment:
| Q |
18 |
tgtatgttgctcaaattgtggcaagaacttttcaatcataccaatgtgtgtacgtgaccaaattggagcttactatatcaattatttcttgcttttaatt |
117 |
Q |
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| T |
8847768 |
tgtatgttgctcaaattgtggcgagaacttttcaatcataccaatgtgtgtacgtgaccaaattggagcttactatatcaattatttcttgctgttaatt |
8847669 |
T |
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| Q |
118 |
cgtatgtaaccattcaatcttgatcgaacaatctaaaatgtatcg |
162 |
Q |
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| T |
8847668 |
cttatgtagctattccatcttgatcgaacaatctaaaatgtatcg |
8847624 |
T |
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