View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_30 (Length: 458)
Name: NF11703_low_30
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 34226923 - 34227157
Alignment:
| Q |
19 |
cattgaacatgtaggtgccacattggttatctcaaatgcgcaaagttagggacaattctgaaaattatatgtttggaattta----ttgtcattttcagc |
114 |
Q |
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| T |
34226923 |
cattgaacatgtaggtgccacattggttatctcaaatgcgtaaagttatggacaattatgaaaattacatgtttcgaatttattgtttgtcattttcaga |
34227022 |
T |
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| Q |
115 |
aaattatttgttttaaactgatgaattctgtagaagttagggatannnnnnnnnnnnnnnnnnnnnnnnngaagctgagaaacattctatagttcatttt |
214 |
Q |
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| T |
34227023 |
aaattctttgttttaaactgatgaattctgtagcagttagggatagtttgttttcttgtttgttttttgtgaagctgagaaacattctatagttcatttt |
34227122 |
T |
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| Q |
215 |
atcattgacaactccaaaggttgtttcacttgtat |
249 |
Q |
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| T |
34227123 |
atcattgacaactccaaaggttgttttacttgtat |
34227157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 428
Target Start/End: Original strand, 34227152 - 34227292
Alignment:
| Q |
279 |
ttgtatgattgtgatgattttgcagaatagaaaaattaaagccagagaaggagattcaatgggccaaatctgaaattctgcgacgtaattagtttctggt |
378 |
Q |
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| T |
34227152 |
ttgtatgattgtgataattttgcagcatgaaaatattaaagccagagaaggagattc--------------gaaattctgagacataattagtttctggt |
34227237 |
T |
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| Q |
379 |
atccggattag-----tatttttcacatcagctatgcagacaatgacactagttt |
428 |
Q |
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| T |
34227238 |
atccggattagttttttttttttcacatcaactatgcagacaacgacactagttt |
34227292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 185 - 363
Target Start/End: Original strand, 48449616 - 48449798
Alignment:
| Q |
185 |
gaagctgagaaacattctatagttcattttatcattgacaactccaaaggttgtttcacttgtatttgttttt----gaggtggataatttgtttctatt |
280 |
Q |
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| T |
48449616 |
gaagctaagaaacattctatagtatattttatcattgactacttcaaagcttgtttcacttgtatttttttttttttgtggtggataatttgtttctatt |
48449715 |
T |
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| Q |
281 |
gtatgattgtgatgattttgcagaatagaaaaattaaagccagagaaggagattcaatgggccaaatctgaaattctgcgacg |
363 |
Q |
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| T |
48449716 |
gtatgattgtgaaaatttttcagtatggaaaaattaaagccagagaaggagattcaacgggccaagtccgaaattctgcgacg |
48449798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 48449513 - 48449557
Alignment:
| Q |
97 |
tttattgtcattttcagcaaattatttgttttaaactgatgaatt |
141 |
Q |
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| T |
48449513 |
tttattgtcattttcagcatattctttgttttaaactgacgaatt |
48449557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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