View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_35 (Length: 430)

Name: NF11703_low_35
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_35
NF11703_low_35
[»] chr5 (6 HSPs)
chr5 (228-268)||(10842645-10842685)
chr5 (230-265)||(6522183-6522218)
chr5 (232-265)||(38779450-38779483)
chr5 (216-268)||(10839062-10839114)
chr5 (230-270)||(13992459-13992499)
chr5 (216-260)||(38726804-38726848)
[»] chr4 (3 HSPs)
chr4 (224-263)||(41424388-41424427)
chr4 (232-261)||(4368826-4368855)
chr4 (217-265)||(29262550-29262598)
[»] chr1 (2 HSPs)
chr1 (232-283)||(28027049-28027100)
chr1 (225-267)||(12476444-12476486)
[»] chr6 (1 HSPs)
chr6 (224-265)||(9681008-9681049)


Alignment Details
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 10842645 - 10842685
Alignment:
Q  228 atattacaacttgtgtttaaatactacggtccagtttataa 268  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  10842645 atattacaatttgtgtttaaatactacggtccaatttataa 10842685  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 6522183 - 6522218
Alignment:
Q  230 attacaacttgtgtttaaatactacggtccagttta 265  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6522183 attacaacttgtgtttaaatactacggtctagttta 6522218  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 38779483 - 38779450
Alignment:
Q  232 tacaacttgtgtttaaatactacggtccagttta 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  38779483 tacaacttgtgtttaaatactacagtccagttta 38779450  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 10839114 - 10839062
Alignment:
Q  216 acttaggattatatattacaacttgtgtttaaatactacggtccagtttataa 268  Q
    ||||||| ||| || |||||| ||||||||||||||||| |||| ||||||||    
T  10839114 acttagggttacatgttacaatttgtgtttaaatactacagtccggtttataa 10839062  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 13992459 - 13992499
Alignment:
Q  230 attacaacttgtgtttaaatactacggtccagtttataata 270  Q
    ||||||||||||||||||||||||| || ||||||| ||||    
T  13992459 attacaacttgtgtttaaatactaccgttcagtttacaata 13992499  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 38726804 - 38726848
Alignment:
Q  216 acttaggattatatattacaacttgtgtttaaatactacggtcca 260  Q
    ||||||| ||| | ||||||||||||||||||||||| |||||||    
T  38726804 acttagggttagagattacaacttgtgtttaaatacttcggtcca 38726848  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 41424388 - 41424427
Alignment:
Q  224 ttatatattacaacttgtgtttaaatactacggtccagtt 263  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  41424388 ttatatattacaatttatgtttaaatactacggtccagtt 41424427  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 4368826 - 4368855
Alignment:
Q  232 tacaacttgtgtttaaatactacggtccag 261  Q
    ||||||||||||||||||||||||||||||    
T  4368826 tacaacttgtgtttaaatactacggtccag 4368855  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 29262550 - 29262598
Alignment:
Q  217 cttaggattatatattacaacttgtgtttaaatactacggtccagttta 265  Q
    |||||| ||||| |||||||||||||||| || |||||||| |||||||    
T  29262550 cttagggttatagattacaacttgtgtttcaaaactacggttcagttta 29262598  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 28027049 - 28027100
Alignment:
Q  232 tacaacttgtgtttaaatactacggtccagtttataatattgcccttgaacc 283  Q
    |||||||||||||||||||||||||| ||||||| ||  || ||||||||||    
T  28027049 tacaacttgtgtttaaatactacggttcagtttacaaggttacccttgaacc 28027100  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 12476486 - 12476444
Alignment:
Q  225 tatatattacaacttgtgtttaaatactacggtccagtttata 267  Q
    |||||| || |||| ||||||||||||||||||||||||||||    
T  12476486 tatatagtagaactagtgtttaaatactacggtccagtttata 12476444  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 9681049 - 9681008
Alignment:
Q  224 ttatatattacaacttgtgtttaaatactacggtccagttta 265  Q
    ||||| |||||||||||| |||||||| ||||||||||||||    
T  9681049 ttatagattacaacttgtatttaaatattacggtccagttta 9681008  T

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