View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_low_38 (Length: 406)
Name: NF11703_low_38
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 33)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 23 - 393
Target Start/End: Complemental strand, 27474074 - 27473704
Alignment:
| Q |
23 |
ttcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttg |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27474074 |
ttcaattcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttg |
27473975 |
T |
|
| Q |
123 |
gctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27473974 |
gctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgga |
27473875 |
T |
|
| Q |
223 |
acacccacagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtctaaaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27473874 |
acacccacagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtctaaaa |
27473775 |
T |
|
| Q |
323 |
tagacagacttgtatatagaaaagactatagtttttgaacttcaaat--gagttggaatgtgaatgatctgtg |
393 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
27473774 |
tagacagacttgtatatagaaaagac--tagtttttgaacttcaaatgggagttggaatgtgaatgatttgtg |
27473704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 23 - 393
Target Start/End: Complemental strand, 27467003 - 27466631
Alignment:
| Q |
23 |
ttcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttg |
122 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27467003 |
ttcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttg |
27466904 |
T |
|
| Q |
123 |
gctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgga |
222 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
27466903 |
gctcagcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacactgctagatatccctttgga |
27466804 |
T |
|
| Q |
223 |
acacccacagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtctaaaa |
322 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27466803 |
acgcccacagattttgaagatgatgaccttttgatgatactaggtaaacggaaacccattgtcgtattgtatgtgttgaaaagaagagattggtctaaaa |
27466704 |
T |
|
| Q |
323 |
tagacagacttgtatatagaaaagactatagtttttgaacttcaaat--gagttggaatgtgaatgatctgtg |
393 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
27466703 |
tagacaaacttgtatatagaaaagagtcaagtttttgaacttcaaatgagagttggaatgtgaatgatttgtg |
27466631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 23 - 393
Target Start/End: Original strand, 27516567 - 27516932
Alignment:
| Q |
23 |
ttcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttg |
122 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||| |||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
27516567 |
ttcaattcaagttagaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccattggatggtcatattcaaattgttcctcagcttg |
27516666 |
T |
|
| Q |
123 |
gctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgga |
222 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
27516667 |
gttcaacaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatgtcctttcctacatacacagctagatatccctttgga |
27516766 |
T |
|
| Q |
223 |
acacccacagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtctaaaa |
322 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
27516767 |
acgcccacagattttgaagatgatgaccttttgatgatactaggtaaacgaaaacccattg-----ttgtatgtgttgaaaataagagattggtctaaaa |
27516861 |
T |
|
| Q |
323 |
tagacagacttgtatatagaaaagactatagtttttgaacttcaaatgagttggaatgtgaatgatctgtg |
393 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
27516862 |
tagacagacttgtatatagaaaagactcaagttttttaacttcaaatgagttggaatgtgaatgatttgtg |
27516932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 388
Target Start/End: Original strand, 27526069 - 27526432
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
27526069 |
attcaattcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagctt |
27526168 |
T |
|
| Q |
122 |
ggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||| ||||||| ||| |||||||| | |||||| | |||||| || ||||| ||||||||||||||||| |
|
|
| T |
27526169 |
ggctcaacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttgg |
27526268 |
T |
|
| Q |
222 |
aacacccacagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtctaaa |
321 |
Q |
| |
|
|||| | ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| |
|
|
| T |
27526269 |
aacatcgacaccttttgaagatgatgcccttttgatgatactaggtaaacgaaaacccattgttgta-tgtatgtgttgaaaaggagagattggtctaaa |
27526367 |
T |
|
| Q |
322 |
atagacagacttgtatatagaaaagactatagtttttgaacttcaaatgagttggaatgtgaatgat |
388 |
Q |
| |
|
| ||| |||||||||| ||| |||||| ||||| ||||||||| ||| |||| ||||||||||| |
|
|
| T |
27526368 |
aaagaaagacttgtatttag--aagactcaagtttctgaacttcagatgccttgggatgtgaatgat |
27526432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 22 - 386
Target Start/End: Complemental strand, 27469643 - 27469279
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
|||||||| ||| || | ||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |
|
|
| T |
27469643 |
attcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagctt |
27469544 |
T |
|
| Q |
122 |
ggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|||||| || |||||| |||||| ||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
27469543 |
ggctcaacagttcttgtaatgatgtttgcttcaaatatgatatagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg |
27469444 |
T |
|
| Q |
222 |
aacacccacagattttgaagatgatgccct---tttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtct |
318 |
Q |
| |
|
||| |||||| ||||||||||||| | || | |||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
27469443 |
aacgtccacagcttttgaagatgatactcttgatctgatgagacttggtaaacgaaaacccattgttgta-tgtatgtgtttaaaagagaagcttggtct |
27469345 |
T |
|
| Q |
319 |
aaaatagacagacttgtatatagaaaagactatagtttttgaacttcaaatgagttggaatgtgaatg |
386 |
Q |
| |
|
|||| ||| ||| |||||||||| |||||| ||||| |||| |||||||| |||| ||||||||| |
|
|
| T |
27469344 |
aaaaaagaaagagttgtatatag--aagactcaagtttctgaatttcaaatgccttgggatgtgaatg |
27469279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 22 - 388
Target Start/End: Original strand, 27500295 - 27500654
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
||||||||||||| | |||||| |||||||||| |||||||| |||||||||||| | |||||||||||||| |||||| | || ||||| ||| || |
|
|
| T |
27500295 |
attcaattcaagcaagaagtgaattctaagaaaaggtcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagatt |
27500394 |
T |
|
| Q |
122 |
ggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|||||||||||||||||||||| |||| || || |||||||||||||||||||||| |||||| | ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
27500395 |
ggctcagcaattcttggaatgaactttggtttaagtatgatatagggatcacaaatcgcttcattttctctcctacgtacactgctagatatccttttgg |
27500494 |
T |
|
| Q |
222 |
aacacccacagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtctaaa |
321 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
27500495 |
tacgtccacagattttgaagatgatgaccttttgatgatactaggtaaacgaaaacccattgttgtac-----gtgttaaaaagaatggattggtctaaa |
27500589 |
T |
|
| Q |
322 |
atagacagacttgtatatagaaaagactatagtttttgaacttcaaatgagttggaatgtgaatgat |
388 |
Q |
| |
|
| ||| ||| |||||||||| |||| | ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
27500590 |
aaagaaagagttgtatatag--aagagtcaagtttctgaatttcaaatgagttggaatgtgaatgat |
27500654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 49 - 385
Target Start/End: Complemental strand, 27476843 - 27476510
Alignment:
| Q |
49 |
aagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgattttt |
148 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
27476843 |
aagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaatgaggttt |
27476744 |
T |
|
| Q |
149 |
gcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacacccacagattttgaagatgatgc |
248 |
Q |
| |
|
| ||||| ||||||| ||| |||||||| | |||||| | ||| || || ||||| |||||||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
27476743 |
ggttcaagtatgatacaggaatcacaaaccgcttcattttctcaccaacatacactgctagatatccctttggaacgtccacggtttttgaagatgatgt |
27476644 |
T |
|
| Q |
249 |
ccttttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtctaaaatagacagacttgtatatagaaaagac |
348 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||| | |||| ||||||| ||| | | |||||||||| ||||| |
|
|
| T |
27476643 |
ccttttgatgatactaggtaaacggaaacccattgttgta-tgtatgtgttgaaaagaagatattgatctaaaaaagaaacagttgtatatag--aagac |
27476547 |
T |
|
| Q |
349 |
tatagtttttgaacttcaaatgagttggaatgtgaat |
385 |
Q |
| |
|
| ||||| |||| |||||||| |||| |||||||| |
|
|
| T |
27476546 |
tcaagtttctgaatttcaaatgccttgggatgtgaat |
27476510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 22 - 388
Target Start/End: Original strand, 27523360 - 27523725
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
|||||||||||| || |||| || |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
27523360 |
attcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccacccattggatggtcatattcaaattgttcctcggctt |
27523459 |
T |
|
| Q |
122 |
ggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||||| ||| |||||||| | |||||| | ||||||||||||||| |||||||| |||||||| |
|
|
| T |
27523460 |
cgctcaacaattcttggaatgaagtttggttcaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatagccctttgg |
27523559 |
T |
|
| Q |
222 |
aacacccacagattttgaagatgatgccct---tttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtct |
318 |
Q |
| |
|
||| |||||| |||||||||||||||||| | |||||||||| ||||||||||||||||||||||| |||||| ||||||| || ||||||||||| |
|
|
| T |
27523560 |
aacgtccacagcttttgaagatgatgcccttgatctgatgatactacgtaaacgaaaacccattgttgta-tgtatgagttaaaaggagaagattggtct |
27523658 |
T |
|
| Q |
319 |
aaaatagacagacttgtatatagaaaagactatagtttttgaacttcaaatgagttggaatgtgaatgat |
388 |
Q |
| |
|
|||| ||| ||| |||| ||||| |||||| ||||| |||||||||| ||| |||| ||||||||||| |
|
|
| T |
27523659 |
aaaa-agaaagagttgtgtatag--aagactcaagtttctgaacttcaactgacttgggatgtgaatgat |
27523725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 27487166 - 27486851
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
|||||||||||| || |||| || |||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
27487166 |
attcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagctt |
27487067 |
T |
|
| Q |
122 |
ggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|| ||| ||||||||| || ||| ||| || || ||||||| |||||||||||| | |||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
27487066 |
ggttcaacaattcttgaaacgatggttggtttaagtatgataaagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg |
27486967 |
T |
|
| Q |
222 |
aacacccacagattttgaagatgatgccct---tttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtct |
318 |
Q |
| |
|
||| |||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||| ||| ||| |
|
|
| T |
27486966 |
aacgtccacagcttttgaagatgatgcccttgatctgatgatacttggtaaacggaaacccattgttgta-tgtatgtgttgaaaagagaagcttgatct |
27486868 |
T |
|
| Q |
319 |
aaaatagacagacttgt |
335 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
27486867 |
aaaaatgaaagacttgt |
27486851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 27460643 - 27460474
Alignment:
| Q |
40 |
gtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttgga |
139 |
Q |
| |
|
||||| || ||||||| |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27460643 |
gtgatatccaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttgga |
27460544 |
T |
|
| Q |
140 |
atgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
27460543 |
atgatttttgcttcaaatatgatatagggatcacaaatctcttcatgtcctctcctatgtacactgctag |
27460474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 322
Target Start/End: Original strand, 27513733 - 27514031
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| || ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||| || |
|
|
| T |
27513733 |
attcaattcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagctt |
27513832 |
T |
|
| Q |
122 |
ggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|| ||| |||||||||||| || |||| ||||| |||||||| ||||||||||| | |||||| | ||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
27513833 |
ggttcaacaattcttggaacgaggtttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttgg |
27513932 |
T |
|
| Q |
222 |
aacacccacagattttgaagatgatgcccttt---tgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaagaaaagattggtct |
318 |
Q |
| |
|
|| | |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
27513933 |
cacgtcaacagcttttgaagatgatacccttgatctgatgatacttggtaaacgaaaacccattgttgtat-----gaattaaaaagagaagattggtct |
27514027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 27505659 - 27505943
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
|||||||||||| || || |||| |||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
27505659 |
attcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagctt |
27505758 |
T |
|
| Q |
122 |
ggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|| ||| ||||||||||||||| |||| ||||| ||||||| ||| |||||||| | |||||| | ||||||||||||||| |||||||| |||||||| |
|
|
| T |
27505759 |
ggttcaacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatacccctttgg |
27505858 |
T |
|
| Q |
222 |
aacacccacagattttgaagatgatgccct---tttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaa |
304 |
Q |
| |
|
|| ||| | |||||||||||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
27505859 |
cacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgta-tgtatgtgttgaaaa |
27505943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 27480084 - 27479798
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
|||||||||||| || || | || |||||||||| |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27480084 |
attcaattcaagtgagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagctt |
27479985 |
T |
|
| Q |
122 |
ggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|| ||| ||| | |||||||||| |||| ||||| ||||||| ||| |||||||| | |||||| | |||||||||||| || |||||||| || ||||| |
|
|
| T |
27479984 |
ggttcaacaacttttggaatgatgtttggttcaagtatgatacaggaatcacaaaacgcttcattttctctcctacgtatactgctagatagccttttgg |
27479885 |
T |
|
| Q |
222 |
aacacccacagattttgaagatgatgccct---tttgatgatacttggtaaacgaaaacccattgttgtattgtatgtgttaaaaaga |
306 |
Q |
| |
|
|| ||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
27479884 |
cacgtccaaaccttttgaagatgatgcccttgatctgatgatacttggtaaacgaaaacccattgttgta-tgtatgtgttgaaaaga |
27479798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 27498591 - 27498338
Alignment:
| Q |
29 |
tcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcag |
128 |
Q |
| |
|
|||| ||| ||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||| |
|
|
| T |
27498591 |
tcaaacgagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaa |
27498492 |
T |
|
| Q |
129 |
caattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacaccc |
228 |
Q |
| |
|
||| |||||||| ||| ||| ||||| |||||||||||||||||||| | ||||| |||||||| || || || ||||||||||||||||| | || |
|
|
| T |
27498491 |
caagtcttggaacgatggttggttcaagtatgatatagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttggcatgtcc |
27498392 |
T |
|
| Q |
229 |
acagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccatt |
282 |
Q |
| |
|
|| ||||||||| |||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
27498391 |
acgccttttgaagacgatgtccttctgatgatacctggtaaacgaaaacccatt |
27498338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 27502771 - 27503028
Alignment:
| Q |
29 |
tcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcag |
128 |
Q |
| |
|
|||||||| ||||||| |||| ||||| |||||| | ||||||||||| ||||||||||||||||| |||||| |||||| |||| || ||||||||| |
|
|
| T |
27502771 |
tcaagcgagaagtgatatctacgaaaaaatcttcttcacaaggaatagtaagaccacccattggatggtcatatccaaattcttccacagcttggctcag |
27502870 |
T |
|
| Q |
129 |
caattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacaccc |
228 |
Q |
| |
|
||| ||||| ||||| |||| ||||||||||| || || |||||||| | |||||||| ||||||||| || || || |||||||| ||||| ||| || |
|
|
| T |
27502871 |
caagtcttgaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttcatcttctctcctacataaacggcaagatatccttttggcacatcc |
27502970 |
T |
|
| Q |
229 |
acagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtat |
289 |
Q |
| |
|
| |||||||||||||| ||||| |||||| ||||||| ||||||||||| |||||| |
|
|
| T |
27502971 |
aagccttttgaagatgatgaccttt---tgatacctggtaaatgaaaacccattcttgtat |
27503028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 244
Target Start/End: Complemental strand, 27557656 - 27557450
Alignment:
| Q |
38 |
aagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttg |
137 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
27557656 |
aagtgatatctaagaaaacatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttg |
27557557 |
T |
|
| Q |
138 |
gaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacacccacagatttt |
237 |
Q |
| |
|
|||||| ||| || || ||||| || ||||||||||| |||||||| |||||||| || || || || ||||||||| |||| ||| ||||| ||| |
|
|
| T |
27557556 |
aaatgatggttggtttaagtatgacattgggatcacaaacctcttcatttcctctccaacatatacggcaagatatccccttggcacatccacacccttt |
27557457 |
T |
|
| Q |
238 |
gaagatg |
244 |
Q |
| |
|
||||||| |
|
|
| T |
27557456 |
gaagatg |
27557450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 27444756 - 27444973
Alignment:
| Q |
27 |
attcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctc |
126 |
Q |
| |
|
|||||| ||| |||| || ||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||| | ||||||||||| ||| || |
|
|
| T |
27444756 |
attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattc |
27444855 |
T |
|
| Q |
127 |
agcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacac |
226 |
Q |
| |
|
| |||||||| |||||| ||| |||| |||||||| ||||||||||| |||||||| |||||||| ||||| || || |||||||||||||| ||| |
|
|
| T |
27444856 |
aataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacat |
27444955 |
T |
|
| Q |
227 |
ccacagattttgaagatg |
244 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
27444956 |
ccacgccttttgaagatg |
27444973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 27501484 - 27501233
Alignment:
| Q |
38 |
aagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttg |
137 |
Q |
| |
|
||||||| |||||||| | |||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||| ||| ||| ||||| |
|
|
| T |
27501484 |
aagtgatatctaagaacatgtcttctctacaaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttg |
27501385 |
T |
|
| Q |
138 |
gaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacacccacagatttt |
237 |
Q |
| |
|
|| || ||| || || |||||||| ||||||||||| | ||||| |||||||| || || || |||||| ||||||||||||| | ||| |||| |
|
|
| T |
27501384 |
aaacaatggttggtttaagtatgatattgggatcacaaaccgtttcatttcctctccaacatatactgctagacatccctttggaacctcgacacctttt |
27501285 |
T |
|
| Q |
238 |
gaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtat |
289 |
Q |
| |
|
|||||||||| |||| | | ||||| |||||||||||||||||| |||||| |
|
|
| T |
27501284 |
gaagatgatgtccttcttaggataccaggtaaacgaaaacccattcttgtat |
27501233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 27502092 - 27502210
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcacttt |
121 |
Q |
| |
|
|||||||| ||| || | ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27502092 |
attcaatttaagtgagaggtgatatctaagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcagctt |
27502191 |
T |
|
| Q |
122 |
ggctcagcaattcttggaa |
140 |
Q |
| |
|
|| ||| |||||||||||| |
|
|
| T |
27502192 |
ggttcaacaattcttggaa |
27502210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 27431110 - 27431268
Alignment:
| Q |
27 |
attcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctc |
126 |
Q |
| |
|
|||||| ||| |||| || | ||||||||||||||||| ||||||||| || |||||||| ||||||| |||||| ||||||||||||| ||| || |
|
|
| T |
27431110 |
attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattc |
27431209 |
T |
|
| Q |
127 |
agcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcat |
185 |
Q |
| |
|
| ||||||||| ||||| ||| ||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
27431210 |
aacaattcttgaaatgacggttggttcaagtatgatattgggatcacaaacctcttcat |
27431268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 27507777 - 27508034
Alignment:
| Q |
29 |
tcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcag |
128 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||| | |||||||| || ||||||||||||||||| |||||| |||||| ||| || ||||| || |
|
|
| T |
27507777 |
tcaagcgagaagtgatatctaagaaaagatcttcttcacaaggaattgtaagaccacccattggatggtcatatccaaattcttcgacagcctggctgag |
27507876 |
T |
|
| Q |
129 |
caattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacaccc |
228 |
Q |
| |
|
||| ||||| | ||| |||| ||||||||||| || || || ||||| | |||||| | ||||||||||||| || || ||||||||||| | | || |
|
|
| T |
27507877 |
caactcttgaagtgaagtttgattcaaatatgacattggaattacaaaccgcttcatttttactcctacgtacaccgcaaggtatccctttggcatatcc |
27507976 |
T |
|
| Q |
229 |
acagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtat |
289 |
Q |
| |
|
| ||||||||||||||||||| |||||| |||||| ||||||||||| |||||| |
|
|
| T |
27507977 |
aagccttttgaagatgatgccctt---ctgataccaggtaaatgaaaacccattcttgtat |
27508034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 27554487 - 27554377
Alignment:
| Q |
27 |
attcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctc |
126 |
Q |
| |
|
|||||| ||| |||| || ||||||||||||||||||| |||||||| || |||| |||| |||||||||||||| |||||||||||||| ||| || |
|
|
| T |
27554487 |
attcaaacgagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattc |
27554388 |
T |
|
| Q |
127 |
agcaattcttg |
137 |
Q |
| |
|
||||||||||| |
|
|
| T |
27554387 |
agcaattcttg |
27554377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 17970452 - 17970283
Alignment:
| Q |
52 |
aaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgct |
151 |
Q |
| |
|
||||| |||||| ||||||||| || || ||||||||||||||||| ||| | |||| |||||| | |||||||| | ||| ||||| |||| | |
|
|
| T |
17970452 |
aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt |
17970353 |
T |
|
| Q |
152 |
tcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|||| ||||| ||||||||||||| | |||||| |||||||| |||||||| || |||||||||||||| |
|
|
| T |
17970352 |
tcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttgg |
17970283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 27419037 - 27419115
Alignment:
| Q |
31 |
aagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaatt |
109 |
Q |
| |
|
|||||| |||||| | ||||||| | ||||| ||||||||||| || |||||||||||||||||||||||| |||||| |
|
|
| T |
27419037 |
aagcgagaagtgagttgtaagaaagcatcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaatt |
27419115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 27567436 - 27567359
Alignment:
| Q |
24 |
tcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcata |
101 |
Q |
| |
|
|||||||||| || |||||| ||||||||| | ||||| | ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
27567436 |
tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatcata |
27567359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 27571764 - 27571719
Alignment:
| Q |
64 |
ccgcaaggaatagttagaccacccattggatgatcatattcaaatt |
109 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |||||| |
|
|
| T |
27571764 |
ccgcaaggaattgtgagaccacccattggatgatcatatccaaatt |
27571719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 27415760 - 27415648
Alignment:
| Q |
66 |
gcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgcttcaaatatgatata |
165 |
Q |
| |
|
||||||||| || || |||||||| | |||||||||| |||| | ||||||| ||| |||| ||| ||||| || ||| ||| ||||| |||||||| |
|
|
| T |
27415760 |
gcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagtatgatatg |
27415661 |
T |
|
| Q |
166 |
gggatcacaaatc |
178 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27415660 |
gggatcacaaatc |
27415648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 27425951 - 27425843
Alignment:
| Q |
66 |
gcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgcttcaaatatgatata |
165 |
Q |
| |
|
||||||||| || || |||||||| |||||||||||| |||| | ||||||| ||| |||| || ||||| |||||| ||| ||||| |||||||| |
|
|
| T |
27425951 |
gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgatatt |
27425852 |
T |
|
| Q |
166 |
gggatcaca |
174 |
Q |
| |
|
||||||||| |
|
|
| T |
27425851 |
gggatcaca |
27425843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 27563347 - 27563463
Alignment:
| Q |
66 |
gcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgcttcaaatatgatata |
165 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||| |||| | ||| || ||| |||||||| ||||| || || |||| ||||| ||||||| |
|
|
| T |
27563347 |
gcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgatacg |
27563446 |
T |
|
| Q |
166 |
gggatcacaaatctctt |
182 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
27563447 |
gggatcacaattctctt |
27563463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 27559223 - 27559282
Alignment:
| Q |
48 |
taagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaa |
107 |
Q |
| |
|
||||||| | ||||| | ||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
27559223 |
taagaaagcatcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaa |
27559282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 27566146 - 27566193
Alignment:
| Q |
242 |
atgatgcccttttgatgatacttggtaaacgaaaacccattgttgtat |
289 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||||| ||||| |
|
|
| T |
27566146 |
atgatgcccttttgataatactagggaaacgaaaacccattgctgtat |
27566193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 27412803 - 27412693
Alignment:
| Q |
66 |
gcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgcttcaaatatgatata |
165 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||| |||| | ||| ||| ||| |||| || ||||| ||| || ||| ||||| |||||||| |
|
|
| T |
27412803 |
gcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatatt |
27412704 |
T |
|
| Q |
166 |
gggatcacaaa |
176 |
Q |
| |
|
||||||||||| |
|
|
| T |
27412703 |
gggatcacaaa |
27412693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 27446306 - 27446245
Alignment:
| Q |
46 |
tctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaa |
107 |
Q |
| |
|
||||||||||| ||||| | ||||||||| | |||||| ||||| |||||||||||||||| |
|
|
| T |
27446306 |
tctaagaaaacatcttcactgcaaggaatcgagagaccatccattcgatgatcatattcaaa |
27446245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 1754206 - 1754465
Alignment:
| Q |
29 |
tcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcag |
128 |
Q |
| |
|
|||||||| ||||||| |||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||| || | | || |
|
|
| T |
1754206 |
tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttag |
1754304 |
T |
|
| Q |
129 |
caattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacaccc |
228 |
Q |
| |
|
||||| ||| ||||| ||| ||||| ||||||| ||||||||||| | |||||| || ||||| || || |||||||||||||| ||||| | || |
|
|
| T |
1754305 |
caatttttgaaatgacgattggttcaagtatgatacggggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttggctcgtcc |
1754404 |
T |
|
| Q |
229 |
acagattttgaagatgatgcccttttgatgatacttggtaaacgaaaacccattgttgtat |
289 |
Q |
| |
|
|| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1754405 |
acgccttttggggatgatgtccttttgatgatactaggtaaacgaaaacccattgttgtat |
1754465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 1759435 - 1759252
Alignment:
| Q |
22 |
attcaattcaagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctca-ct- |
119 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||| ||||||| |||| |||| || ||||||||||||||||| | |||||||||||||||||| || |
|
|
| T |
1759435 |
attcaattcaagtgagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccacccattggatggttgtattcaaattgttcctcagctt |
1759336 |
T |
|
| Q |
120 |
--ttggctcagcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtac |
201 |
Q |
| |
|
|||||||| |||||||||||||||| |||| || |||||||||| ||| |||||||| | |||||| | ||||||||||||| |
|
|
| T |
1759335 |
gcttggctcaacaattcttggaatgatgtttggtttaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtac |
1759252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 38044042 - 38043887
Alignment:
| Q |
66 |
gcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgcttcaaatatgatata |
165 |
Q |
| |
|
||||||||| || || || |||||||||||||||||| |||||| |||||| ||| |||||||| ||||| || || |||| ||||| ||||| ||| |
|
|
| T |
38044042 |
gcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacata |
38043943 |
T |
|
| Q |
166 |
gggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
||||||||||| | |||||| |||||||| | |||||| || ||||| | |||||| |
|
|
| T |
38043942 |
gggatcacaaaccgcttcatttcctctccaaagtacactgcaagatagctctttgg |
38043887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 48840696 - 48840867
Alignment:
| Q |
49 |
aagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcct-cactttggctcagcaattcttggaatgatttt |
147 |
Q |
| |
|
|||||||| |||||| ||||||||| || || ||||||||||||||||||||| |||||| || || ||||| |||| ||| ||||| ||||| | |
|
|
| T |
48840696 |
aagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt--actcaacaagtcttgaaatgaggct |
48840793 |
T |
|
| Q |
148 |
tgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|| ||||| |||| || ||||| ||||||| ||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
48840794 |
tggttcaagtatggcatggggattacaaatcgcttcatctcctctccgacgtacaatgcaagatatccctttgg |
48840867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 50904758 - 50904948
Alignment:
| Q |
31 |
aagcgaaaagtgatgtctaagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagca |
130 |
Q |
| |
|
|||||| ||||||| | || ||||| ||||||| ||||||||| || || ||||||||||||||||||||| | |||| ||||| | | |||| || |
|
|
| T |
50904758 |
aagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaaca |
50904857 |
T |
|
| Q |
131 |
attcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
| ||||| ||||| |||| ||||| || || ||| |||||||||| | |||||| || ||||| |||||||| || |||||||||||||| |
|
|
| T |
50904858 |
agtcttgaaatgaagtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttgg |
50904948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 244
Target Start/End: Complemental strand, 55084942 - 55084747
Alignment:
| Q |
49 |
aagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgattttt |
148 |
Q |
| |
|
|||||||| |||||| ||||||||| || || ||||||||||||||||| ||| |||||| |||||| | |||| ||| ||||| |||||| || |
|
|
| T |
55084942 |
aagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaatgatggtt |
55084843 |
T |
|
| Q |
149 |
gcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttggaacacccacagattttgaagatg |
244 |
Q |
| |
|
| ||||| || || |||||||||||||| | |||||| | |||||| || ||||| || ||| | || ||||| ||| |||||||||||| |||| |
|
|
| T |
55084842 |
ggttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagattttgatgatg |
55084747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 38028750 - 38028922
Alignment:
| Q |
49 |
aagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgattttt |
148 |
Q |
| |
|
||||||||||||||| ||||||||| || || || ||||||||||| |||||| |||||| |||||| ||| |||| || | ||| ||||| || |
|
|
| T |
38028750 |
aagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttgactcaacaggttttgaaatgaagctt |
38028849 |
T |
|
| Q |
149 |
gcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
| ||||| ||||| | ||||| ||||||| |||||| | |||||| |||||||| || ||||| |||||||| |
|
|
| T |
38028850 |
ggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttgg |
38028922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 50910116 - 50910049
Alignment:
| Q |
49 |
aagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctc |
116 |
Q |
| |
|
||||| || |||||| ||||||||| || || ||||||||||||||||||||| |||||| |||||| |
|
|
| T |
50910116 |
aagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctc |
50910049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 50911853 - 50911920
Alignment:
| Q |
49 |
aagaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctc |
116 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
50911853 |
aagaaaacaccttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctc |
50911920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 38024861 - 38024926
Alignment:
| Q |
51 |
gaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctc |
116 |
Q |
| |
|
||||| ||||||| ||||||||| || || ||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
38024861 |
gaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctc |
38024926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 38031313 - 38031378
Alignment:
| Q |
51 |
gaaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctc |
116 |
Q |
| |
|
||||| ||||||| ||||||||| || || ||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
38031313 |
gaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctc |
38031378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 3073722 - 3073553
Alignment:
| Q |
52 |
aaaacgtcttctccgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttttgct |
151 |
Q |
| |
|
||||| |||||| ||||||||| || || ||||||||||||||||| ||| | |||| |||||| | |||||||| | ||| ||||| |||| | |
|
|
| T |
3073722 |
aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt |
3073623 |
T |
|
| Q |
152 |
tcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttgg |
221 |
Q |
| |
|
|||| ||||| ||||||||||||| | |||||| |||||||| |||||||| || |||||||||||||| |
|
|
| T |
3073622 |
tcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttgg |
3073553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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