View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_low_39 (Length: 401)
Name: NF11703_low_39
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 33270497 - 33270110
Alignment:
| Q |
1 |
ccacctaaaggtctcaggtttcattctctccggtggcaatttagaaactgttaattttcttttaaatgtatagattgaatgattaatttaatctgctgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270497 |
ccacctaaaggtctcaggtttcattctctccggtggcaatttgaaaactgttaattttcttttaaatgtatagattgaatgattaatttaatctgctgca |
33270398 |
T |
|
| Q |
101 |
ggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270397 |
ggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttgct |
33270298 |
T |
|
| Q |
201 |
tgggattagtaacttcaccaacaaatccgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaattccatccggagaagtaagtact |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270297 |
tgggattagtaacttcaccaacaaatctgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaattccatccggagaagtaagtact |
33270198 |
T |
|
| Q |
301 |
tttttcattttctgggagagaaattcaaatattataaccatagttcccaagtatattgtaattgcaaaattatccttgaacgtgttct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
33270197 |
tttttcattttctgggagagaaattcaaatattataaccatagttcccaagtatattgtaattgcaaaaatatccttgagtgtgttct |
33270110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 39751605 - 39751685
Alignment:
| Q |
99 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtct |
179 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||||| |||| ||||| | ||||| || ||||| |||||||||| |
|
|
| T |
39751605 |
caggttggggttccttgtggattttctgtcacatgctgcaattgttggatttgtagcaggagctgccattgtgattggtct |
39751685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 34662170 - 34662031
Alignment:
| Q |
120 |
ttttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttgcttgggattagtaacttcacc |
219 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||| ||| |||| |||||||| ||||||||| |
|
|
| T |
34662170 |
ttttttatcacatgctgcacttgtaggatttatggcaggtgcagccatcttgattggtcttcaa-agcttaaagggctgctagggattagcaacttcacc |
34662072 |
T |
|
| Q |
220 |
aacaaatccgatgttgtttctgttttggaatctgtttataa |
260 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
34662071 |
aacaaatctgatgttgtttgtgttttggaatctgtttataa |
34662031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 99 - 279
Target Start/End: Complemental strand, 25707237 - 25707057
Alignment:
| Q |
99 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttg |
198 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| ||||| | |
|
|
| T |
25707237 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggattcatggcaggagcagcaatcattattggtcttcagcagctcaagggtctt |
25707138 |
T |
|
| Q |
199 |
cttgggattagtaacttcaccaacaaatccgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaatt |
279 |
Q |
| |
|
| ||||||| | ||||||||| |||| | |||| || || || |||| ||||||||||||||| | ||||| |||||| |
|
|
| T |
25707137 |
ttggggattactcacttcaccaccaaaacagatgcagtatcagtattggtttctgtttataagtcattacatcaacaaatt |
25707057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University