View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_4 (Length: 771)

Name: NF11703_low_4
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_4
NF11703_low_4
[»] chr3 (5 HSPs)
chr3 (244-646)||(1529261-1529663)
chr3 (701-765)||(1529718-1529782)
chr3 (178-245)||(33365925-33365993)
chr3 (245-293)||(42655869-42655917)
chr3 (248-296)||(52041307-52041355)
[»] chr2 (4 HSPs)
chr2 (18-245)||(10983001-10983228)
chr2 (248-331)||(29280184-29280267)
chr2 (245-296)||(38996443-38996494)
chr2 (178-245)||(3081203-3081271)
[»] chr5 (4 HSPs)
chr5 (701-765)||(26841487-26841551)
chr5 (582-641)||(26841367-26841426)
chr5 (178-245)||(43469612-43469680)
chr5 (178-245)||(12870155-12870223)
[»] chr4 (4 HSPs)
chr4 (178-246)||(31525509-31525578)
chr4 (248-331)||(9451341-9451424)
chr4 (248-318)||(24257803-24257873)
chr4 (248-286)||(27067973-27068011)
[»] chr1 (4 HSPs)
chr1 (178-245)||(49195465-49195533)
chr1 (178-245)||(12606643-12606711)
chr1 (178-245)||(40908316-40908384)
chr1 (178-245)||(46566569-46566637)
[»] chr7 (2 HSPs)
chr7 (178-245)||(10646115-10646183)
chr7 (248-351)||(20077210-20077313)
[»] chr6 (1 HSPs)
chr6 (248-296)||(21762121-21762169)
[»] scaffold0238 (1 HSPs)
scaffold0238 (177-245)||(5100-5169)


Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 244 - 646
Target Start/End: Original strand, 1529261 - 1529663
Alignment:
Q  244 atgtttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcatctacctaaggcatatggatgattgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529261 atgtttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcatctacctaaggcatatggatgattgc 1529360  T
Q  344 attaaatagcgtctcacctattctttgtttccaatgtgcctcccatgccactatctacatgtatgttctgttaacaacttgctttgccttttccaatgca 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529361 attaaatagcgtctcacctattctttgtttccaatgtgcctcccatgccactatctacatgtatgttctgttaacaacttgctttgccttttccaatgca 1529460  T
Q  444 ttatagatcacattcttttactctcacctattctcgaaattctgcactacagatctacaatctcttctccacacaaatttcatctctcatagaacagcaa 543  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529461 ttatagatcacattcttttactctcacctattctcaaaattctgcactacagatctacaatctcttctccacacaaatttcatctctcatagaacagcaa 1529560  T
Q  544 cccattcacccttatcgcctctattttcggcactatctacactgtttcgccatctaaaaatgtacagataaaacctcgccgggacggccatgttcggcat 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529561 cccattcacccttatcgcctctattttcggcactatctacactgtttcgccatctaaaaatgtacagataaaacctcgccgggacggccatgttcggcat 1529660  T
Q  644 aac 646  Q
    |||    
T  1529661 aac 1529663  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 701 - 765
Target Start/End: Original strand, 1529718 - 1529782
Alignment:
Q  701 gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctctgcttc 765  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1529718 gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttc 1529782  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 33365993 - 33365925
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    |||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33365993 ggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 33365925  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 42655869 - 42655917
Alignment:
Q  245 tgtttttcctactcatcaaactaagttcaaattttaaatttccctccca 293  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  42655869 tgtttttcctactcatcaagctaagttcaatttttaaatttccctccca 42655917  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 52041355 - 52041307
Alignment:
Q  248 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaa 296  Q
    |||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  52041355 ttttcctactcatcaagctaagttcaatttttaaatttccctcctacaa 52041307  T

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Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 10983001 - 10983228
Alignment:
Q  18 cagtaagttaattggtcattgtacatttattgcgctgtgagggagaagtgggaaagcaaaggatttgattggttgaatgatgtacatgaaaggtcacaat 117  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10983001 cagtaagttaattggtcattgtacatttattgggatgtgagggagaagtgggaaagcaaaggatttgattggttgaatgatgtacatgaaaggtcacaat 10983100  T
Q  118 aaatgcgcccaagaggaagtgggtggttggcagataagccttgcaattaatgacggcttaggagggaaaatcaggattgtttagggcaaactgccagctc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  10983101 aaatgcgcccaagaggaagtgggtggttggcagataagccttgcaattaatgacgaattaggagggaaaatcaggattgattagggcaaactgccagctc 10983200  T
Q  218 atcaagtctggcttttataataaaggat 245  Q
    ||||||||||||||||||||||||||||    
T  10983201 atcaagtctggcttttataataaaggat 10983228  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 29280184 - 29280267
Alignment:
Q  248 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcatctacctaaggcat 331  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||   || ||||||||| |||||| || |||| ||||    
T  29280184 ttttcgtactcatcaagctaagttcaatttttaaatttccctcccacaacctatggagtctgccaatgcatgtatctaatgcat 29280267  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 38996494 - 38996443
Alignment:
Q  245 tgtttttcctactcatcaaactaagttcaaattttaaatttccctcccacaa 296  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  38996494 tgtttttcctactcatcaagttaagttcaaattttaaatttccctcctacaa 38996443  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 3081271 - 3081203
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    ||||||||||| |||  || ||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  3081271 ggagggaaaatgagggatgattagggcaacactgccagctcatcaagtctggctttaatagtaaaggat 3081203  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 701 - 765
Target Start/End: Original strand, 26841487 - 26841551
Alignment:
Q  701 gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctctgcttc 765  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26841487 gcttcgtcggagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttc 26841551  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 582 - 641
Target Start/End: Original strand, 26841367 - 26841426
Alignment:
Q  582 acactgtttcgccatctaaaaatgtacagataaaacctcgccgggacggccatgttcggc 641  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  26841367 acactgtttcgccatctaaaaatgtacagataaaacctcgccggaacagccatgttcggc 26841426  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 43469612 - 43469680
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    ||||||||||| || | || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43469612 ggagggaaaataagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 43469680  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 12870223 - 12870155
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    |||||||||| ||| | || ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  12870223 ggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggat 12870155  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 31525509 - 31525578
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggatg 246  Q
    |||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31525509 ggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatg 31525578  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 9451341 - 9451424
Alignment:
Q  248 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcatctacctaaggcat 331  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||   || ||||||||| |||||| || |||| ||||    
T  9451341 ttttcgtactcatcaagctaagttcaatttttaaatttccctcccacaacctatggagtctgccaatgcatatatctaatgcat 9451424  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 24257803 - 24257873
Alignment:
Q  248 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcat 318  Q
    |||||||| |||||||||||||||||| ||||| || ||||||||||||   ||| |||||||| ||||||    
T  24257803 ttttcctaatcatcaaactaagttcaatttttatatctccctcccacaacctattcagtctgccaatgcat 24257873  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 27067973 - 27068011
Alignment:
Q  248 ttttcctactcatcaaactaagttcaaattttaaatttc 286  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  27067973 ttttcctactcatcaagctaagttcaaaatttaaatttc 27068011  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 49195465 - 49195533
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    |||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49195465 ggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 49195533  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 12606643 - 12606711
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    ||||||||||| |||| || ||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  12606643 ggagggaaaataaggagtgattagggcaacactgccagcacatcaagtctggcttttatagtaaaggat 12606711  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 40908384 - 40908316
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    ||||||||||| |||  || ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  40908384 ggagggaaaatgagggatgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggat 40908316  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 46566637 - 46566569
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    ||||||||||| || | || ||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  46566637 ggagggaaaataagaagtgattagggcaacactgccagctcatcaaatctggcttttataataaaggat 46566569  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 10646115 - 10646183
Alignment:
Q  178 ggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    ||||||||||| || | || ||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  10646115 ggagggaaaataagaagtgattagggcaacactgccagctcatcaagtctggcttttagaataaaggat 10646183  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 351
Target Start/End: Complemental strand, 20077313 - 20077210
Alignment:
Q  248 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcatctacctaaggcatatggatgattgcatta 347  Q
    |||||||| ||||||   || ||||||||| |||||||| |||||| || || | |||| ||  ||||||| || |||||||||||||||||| |||||     
T  20077313 ttttcctaatcatcactttaggttcaaattctaaatttcgctcccataacaattagagtttgtggatgcatgtatctaaggcatatggatgatggcattt 20077214  T
Q  348 aata 351  Q
    ||||    
T  20077213 aata 20077210  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 21762121 - 21762169
Alignment:
Q  248 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaa 296  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  21762121 ttttcctactcatcaagctaagttcaatttttaaatttccctcccacaa 21762169  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 5169 - 5100
Alignment:
Q  177 aggagggaaaatcaggattgtttagggcaa-actgccagctcatcaagtctggcttttataataaaggat 245  Q
    |||||| ||||| |||| || ||||| ||| ||||||||| |||||| ||||||||||||| ||||||||    
T  5169 aggaggaaaaataaggagtgattaggacaacactgccagcacatcaaatctggcttttatagtaaaggat 5100  T

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