View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_40 (Length: 394)
Name: NF11703_low_40
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 378
Target Start/End: Original strand, 48701877 - 48702231
Alignment:
| Q |
24 |
tgtaaccaaatttggtggttccaattccaaccttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgt |
123 |
Q |
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||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48701877 |
tgtaatcaaatttggtgtttccaattccaactttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgt |
48701976 |
T |
|
| Q |
124 |
gtcaacaagttttggattgtcacttatgaatttccttttccatctaactctaaaatcatctagnnnnnnngttctaggaatataagtcctaacacccaac |
223 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
48701977 |
gtcaacaagttttggattgtcatttatgaatttacttttccatctaactctaaaatcatctagtttttttgttctaggaatataagtcctaagacccaac |
48702076 |
T |
|
| Q |
224 |
actccttccattgattccctcacattaaaactcaatgagttgaataaattagccataccatcggttactatccaaacatagccttgattcatcatcccaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48702077 |
actccttccattgattccctcacattaaaactcaatgaattaaacaaattagccataccatcggttactatccaaacatagccttgattcatcatcccaa |
48702176 |
T |
|
| Q |
324 |
nnnnnnnngctaaggtaaaaagtttagagccaagacttggtgacatgtgcacaat |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48702177 |
ttttttttgctaaggtaaaaagtttagagccaagacttggtgacatgtgcacaat |
48702231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 378
Target Start/End: Original strand, 48713983 - 48714337
Alignment:
| Q |
24 |
tgtaaccaaatttggtggttccaattccaaccttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgt |
123 |
Q |
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|
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48713983 |
tgtaatcaaatttggtgtttccaattccaactttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgt |
48714082 |
T |
|
| Q |
124 |
gtcaacaagttttggattgtcacttatgaatttccttttccatctaactctaaaatcatctagnnnnnnngttctaggaatataagtcctaacacccaac |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
48714083 |
gtcaacaagttttggattgtcacttatgaatttccttttccatctaaccctaaaatcatctagtttttttgttctaggaatataagtcctaagacccaac |
48714182 |
T |
|
| Q |
224 |
actccttccattgattccctcacattaaaactcaatgagttgaataaattagccataccatcggttactatccaaacatagccttgattcatcatcccaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48714183 |
actccttccattgattccctcacattaaaactcaatgaattaaacaaattggccataccatcggttactatccaaacatagccttgattcatcatcccaa |
48714282 |
T |
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| Q |
324 |
nnnnnnnngctaaggtaaaaagtttagagccaagacttggtgacatgtgcacaat |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48714283 |
ttttttttgctaaggtaaaaagtttagagccaagacttggtgacatgtgcacaat |
48714337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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