View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_43 (Length: 384)

Name: NF11703_low_43
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_43
NF11703_low_43
[»] chr2 (3 HSPs)
chr2 (1-270)||(26456273-26456542)
chr2 (265-336)||(26452772-26452843)
chr2 (334-366)||(26451522-26451554)
[»] chr4 (4 HSPs)
chr4 (25-161)||(36893310-36893446)
chr4 (296-366)||(36893177-36893247)
chr4 (202-265)||(36893249-36893312)
chr4 (333-366)||(52527086-52527119)
[»] scaffold0056 (4 HSPs)
scaffold0056 (1-67)||(51991-52057)
scaffold0056 (1-67)||(57104-57170)
scaffold0056 (132-181)||(51946-51995)
scaffold0056 (132-181)||(57059-57108)
[»] chr6 (1 HSPs)
chr6 (1-80)||(4158423-4158502)
[»] chr8 (1 HSPs)
chr8 (333-366)||(13861790-13861823)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 26456542 - 26456273
Alignment:
Q  1 tagagactgctaaaagatttgggttcaaagaggtacaaattaaaaccatcaggagtaatagatttgataagctataaatttaaaatctcaatcaaaaagt 100  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26456542 tagagacgactaaaagatttgggttcgaagaggtacaaattaaaaccattaggagtaatagatttgataagatataaatttaaaatctcaatcaaaaagt 26456443  T
Q  101 ttgattaaacacaattatcaataatgagagttttgaatagtaattcttatcaactatgagatctataagcttacattttaagtatcaaaatgaacaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26456442 ttgattaaacacaattatcaataatgagagttttgaatagtaattcttatcaactatgagatctataagcttacattttaagtatcaaaatgaacaaatc 26456343  T
Q  201 aagaatgccactattttaaagcataaaaagacatagaaatgattttcattgatatgataataatagaata 270  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26456342 aagaatgccactattttaaagcataaaaaaacatagaaatgattttcattgatatgataataatagaata 26456273  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 26452843 - 26452772
Alignment:
Q  265 agaatatatactgattttgaataaggataagaatttaatagcctttttgtagtagaatatattaatcctcaa 336  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26452843 agaagatatactgattttgaataaggataagaatttaatagcctttttgtagtagaatatactaatcctcaa 26452772  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 26451554 - 26451522
Alignment:
Q  334 caaccgtacagtgatagttttgtaagcaattca 366  Q
    |||||||||||||||||||||||||||||||||    
T  26451554 caaccgtacagtgatagttttgtaagcaattca 26451522  T

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Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 36893446 - 36893310
Alignment:
Q  25 tcaaagaggtacaaattaaaaccatcaggagtaatagatttgataagctataaatttaaaatctcaatcaaaaagtttgattaaacacaattatcaataa 124  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36893446 tcaaagaggtacaaattaaaaccattaggagtaatagatttgataagatataaatttaaaatctcaatcaaaaagtttgattaaacacaattatcaataa 36893347  T
Q  125 tgagagttttgaatagtaattcttatcaactatgaga 161  Q
    |||||||||||||||||||||||||||||||||||||    
T  36893346 tgagagttttgaatagtaattcttatcaactatgaga 36893310  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 36893247 - 36893177
Alignment:
Q  296 aatttaatagcctttttgtagtagaatatattaatcctcaaccgtacagtgatagttttgtaagcaattca 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36893247 aatttaatagcctttttgtagtagaatatattaatcctcaaccgtacagtgatagttttgtaagcaattca 36893177  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 36893312 - 36893249
Alignment:
Q  202 agaatgccactattttaaagcataaaaagacatagaaatgattttcattgatatgataataata 265  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  36893312 agaatgccactattttaaagcataaaaaaacatagaaatgattttccttgatatgataataata 36893249  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 52527086 - 52527119
Alignment:
Q  333 tcaaccgtacagtgatagttttgtaagcaattca 366  Q
    |||| |||||||||||||||||||||||||||||    
T  52527086 tcaatcgtacagtgatagttttgtaagcaattca 52527119  T

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Target: scaffold0056 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 52057 - 51991
Alignment:
Q  1 tagagactgctaaaagatttgggttcaaagaggtacaaattaaaaccatcaggagtaatagatttga 67  Q
    |||||||| |||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||    
T  52057 tagagactactaaaagatttgggttcgtagaggaacaaattaaaaccattaggagtaatagatttga 51991  T

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Target: scaffold0056; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 57170 - 57104
Alignment:
Q  1 tagagactgctaaaagatttgggttcaaagaggtacaaattaaaaccatcaggagtaatagatttga 67  Q
    |||||||| |||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||    
T  57170 tagagactactaaaagatttgggttcgtagaggaacaaattaaaaccattaggagtaatagatttga 57104  T

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Target: scaffold0056; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 51995 - 51946
Alignment:
Q  132 tttgaatagtaattcttatcaactatgagatctataagcttacattttaa 181  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51995 tttgaatagtaattcttatcgactatgagatctataagcttacattttaa 51946  T

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Target: scaffold0056; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 57108 - 57059
Alignment:
Q  132 tttgaatagtaattcttatcaactatgagatctataagcttacattttaa 181  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  57108 tttgaatagtaattcttatcgactatgagatctataagcttacattttaa 57059  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4158423 - 4158502
Alignment:
Q  1 tagagactgctaaaagatttgggttcaaagaggtacaaattaaaaccatcaggagtaatagatttgataagctataaatt 80  Q
    |||||||| ||||||||||||||||  |||||  ||||||||||||||| | ||||||||||||||||||| || |||||    
T  4158423 tagagactactaaaagatttgggtttgaagagaaacaaattaaaaccattaagagtaatagatttgataagataaaaatt 4158502  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 13861790 - 13861823
Alignment:
Q  333 tcaaccgtacagtgatagttttgtaagcaattca 366  Q
    |||| |||||||||||||||||||||||||||||    
T  13861790 tcaatcgtacagtgatagttttgtaagcaattca 13861823  T

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