View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_44 (Length: 381)
Name: NF11703_low_44
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 18191492 - 18191609
Alignment:
| Q |
8 |
gagcagagaaccaggtttggacgaaggcgagagcaagtccaagctccgcagcgtggactacaatattagtccaagcgtgacggatatattttagaaaacg |
107 |
Q |
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| T |
18191492 |
gagcagtgaaccaggcttggacgaaggcgagagcaagtccaagctccgcagcgtggactacaatattagtccaagcgtgacggatatatgttagaaaacg |
18191591 |
T |
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| Q |
108 |
cctgaagttagtcttcaa |
125 |
Q |
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| T |
18191592 |
cctgaagttagtcttcaa |
18191609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 15715204 - 15715164
Alignment:
| Q |
250 |
agcaaaatcctttttgatctcaagtccttcacatcctcagg |
290 |
Q |
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| T |
15715204 |
agcaaaatcccttttgatctcaattccttcacatcttcagg |
15715164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 21698014 - 21697974
Alignment:
| Q |
250 |
agcaaaatcctttttgatctcaagtccttcacatcctcagg |
290 |
Q |
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| T |
21698014 |
agcaaaatccgttttgatctcaattccttcacatcttcagg |
21697974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 21789743 - 21789703
Alignment:
| Q |
250 |
agcaaaatcctttttgatctcaagtccttcacatcctcagg |
290 |
Q |
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| T |
21789743 |
agcaaaatcccttttgatctcaattccttcacatcttcagg |
21789703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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