View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_45 (Length: 379)
Name: NF11703_low_45
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 14538698 - 14538903
Alignment:
| Q |
19 |
taatcacaagatgtgttacgttggtaataacaacgttatgagtataagatgttggagactcactcactcttaacctaatgtgatgatctcacgtgtttta |
118 |
Q |
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| T |
14538698 |
taatcacaagacgtgttacgttggtaataacaacattaagagtataagatgttggagactcactcactcttaacctaatgtgatgatctcacgtgtttaa |
14538797 |
T |
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| Q |
119 |
cacctcctctgaatttaggcatatatattgtaaaatctttttacaaattaacacaaaacatagtaagatttatactcttggtgcatagagatttatacaa |
218 |
Q |
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| T |
14538798 |
cacctcctctgaatttaggcatatatattgtaaaatctttttaaaaattaacacaatacatagtaagatttatagcgttggtgcatagagatttatacaa |
14538897 |
T |
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| Q |
219 |
aatata |
224 |
Q |
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|||||| |
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| T |
14538898 |
aatata |
14538903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 247 - 367
Target Start/End: Original strand, 14538966 - 14539086
Alignment:
| Q |
247 |
atcactttatatataaaaccaatcaatgaacattcataatcatacacacaaagtaacatttatacaagtgagtgagaatcttaccggtggtctactgtga |
346 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14538966 |
atcactttatatataaaaccaatcaatgatcattcataatcatacacacaaagtaccatttatacaagtgagtgagaatcttaccggtggtctactgtga |
14539065 |
T |
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| Q |
347 |
caaacagaatcatggtcgtct |
367 |
Q |
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| T |
14539066 |
caaacagaatcatggtcgtct |
14539086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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