View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_low_46 (Length: 370)
Name: NF11703_low_46
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_46 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 4216909 - 4217251
Alignment:
| Q |
17 |
actaatcggacgtgaacctagccactgtcgaaacagataccaaagacttctaaacacaagacaactcaaaaatagatgttcgactgtttcatccatcccg |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4216909 |
actaatcggctgtgaacctagccactgtcgaaacagataccaaagacttctaaacacaagacaactcaaaaatagatgttcgactgtttcatccatcccg |
4217008 |
T |
|
| Q |
117 |
caaccactggaacattgaatatcagttaatggaatactcttttccgcaatacattttcttttgtaggaatcctattgtnnnnnnntagcctttaccatga |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4217009 |
caaccactcgaacattgaatatcagttaatggaatactcttttccgtaatacattttcttttgtaggaatcctattgtaaaaaaatagcctttaccatga |
4217108 |
T |
|
| Q |
217 |
tctagctaccaatcctaagtgtaaactacaccatcttgaaaatatatattaaaaaacaacaattcacaacactcaccc-tcctcctcccaagctagtaac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4217109 |
tctagctaccaatcctaagtgtaaactacaccatcttgaaaatatatattaaaaaacaacaattcacaacactcacccaccctcctcccaagctagtaac |
4217208 |
T |
|
| Q |
316 |
ctcagacaccaagattaagcatttcgcccaactccccggccta |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4217209 |
ctcagacaccaagattaagcatttcgcccaactccccagccta |
4217251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University