View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_47 (Length: 363)
Name: NF11703_low_47
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 50135873 - 50136088
Alignment:
| Q |
54 |
tccaattcccatgatgatcctttctccacctcattcaaatcttgctattccattcagatctatattccaaatcataaaga-ccagtatgaaatctaatgt |
152 |
Q |
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| T |
50135873 |
tccaattcccatgaaaatcctttctccacctcattcaaatcttgctattccatttagatctatattctaaaacaaaaaaaaccaatacgaaaactaatgt |
50135972 |
T |
|
| Q |
153 |
catagtcatgtctcttgactgatttgagccattaagatttgagccttagtaattaaaaaatcatttctacaacttcaactatttaatgcaaaagaataaa |
252 |
Q |
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| T |
50135973 |
cttagtcatgtctctctactgatttgaacaattaagatttgagccttactaattaataaatcatctctacaacttcagctatttagtgcaaaacaataaa |
50136072 |
T |
|
| Q |
253 |
atatcacattattgaa |
268 |
Q |
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||||||||| |||||| |
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| T |
50136073 |
atatcacatcattgaa |
50136088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 50136124 - 50136178
Alignment:
| Q |
275 |
ttcaagtggaccaattaatatattttccatgaacacagcacattggtgaaccttt |
329 |
Q |
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| T |
50136124 |
ttcaagtagaacagttaatatattttccatgaacgcaagacattggtgaaccttt |
50136178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 17594005 - 17594074
Alignment:
| Q |
278 |
aagtggaccaattaatatattttccatgaacacagcacattggtgaacctttactcatttgtgaacttac |
347 |
Q |
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| T |
17594005 |
aagtggaccaattaatatattttccatgaacacagcacattggtgaacctttactcatttgtgaacttac |
17594074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 34743297 - 34743228
Alignment:
| Q |
278 |
aagtggaccaattaatatattttccatgaacacagcacattggtgaacctttactcatttgtgaacttac |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34743297 |
aagtggaccaattaatatattttccatgaacacagcacattggtgaacctttactcatttgtgaacttac |
34743228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 43314036 - 43314102
Alignment:
| Q |
281 |
tggaccaattaatatattttccatgaacacagcacattggtgaacctttactcatttgtgaacttac |
347 |
Q |
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|
| T |
43314036 |
tggaccaattaatatattttctatgaacacaacacattggtgaaccttaactcatttgtgaacttac |
43314102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 21531105 - 21531039
Alignment:
| Q |
281 |
tggaccaattaatatattttccatgaacacagcacattggtgaacctttactcatttgtgaacttac |
347 |
Q |
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|
||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
21531105 |
tggaccaattaatatattttctatgaacacaacacattggtgaaccttaactcatttgtgaacttac |
21531039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 347
Target Start/End: Complemental strand, 35167057 - 35166999
Alignment:
| Q |
289 |
ttaatatattttccatgaacacagcacattggtgaacctttactcatttgtgaacttac |
347 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
35167057 |
ttaatatattttccatgaacacggcacattggtgaacctttactcatttgtgaacttac |
35166999 |
T |
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