View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11703_low_51 (Length: 352)
Name: NF11703_low_51
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_51 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] chr8 (7 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 54674768 - 54675102
Alignment:
| Q |
18 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54674768 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
54674867 |
T |
|
| Q |
118 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54674868 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
54674967 |
T |
|
| Q |
218 |
agcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54674968 |
agcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagct |
54675067 |
T |
|
| Q |
318 |
tccgttgtatgacaattccccaagaactactctct |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
54675068 |
tccgttgtatgacaattccccaagaactactctct |
54675102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 41700888 - 41701111
Alignment:
| Q |
18 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
117 |
Q |
| |
|
|||||||||| || ||||||||| |||||| ||||||| ||||||| || ||||||||| ||||||||||| ||||||||| || ||||||||| |
|
|
| T |
41700888 |
actcaatactcattttcatcccagaaatcctcatacccagattcaaa-----ctgtatagtcatcatgaaacccataaatccctaaagcaggaaattctc |
41700982 |
T |
|
| Q |
118 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
217 |
Q |
| |
|
| ||||| ||||||| || ||| ||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
41700983 |
agttgtt-acatgtctccggttaatttaaatcacgaatttgttaaacccataaattttgaagttggaaatttatatgagaagggaagaagaagagcaaaa |
41701081 |
T |
|
| Q |
218 |
agcgatgaattgaaacttgtttaacgaaaa |
247 |
Q |
| |
|
||||||||| |||| || |||||||||||| |
|
|
| T |
41701082 |
agcgatgaactgaatctcgtttaacgaaaa |
41701111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 50940359 - 50940321
Alignment:
| Q |
248 |
ttatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
50940359 |
ttatatttaattcatgttttgttaaaaaattataatttt |
50940321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 52082830 - 52082794
Alignment:
| Q |
250 |
atatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |
|
|
| T |
52082830 |
atatttaattcatgttttgttaaaaaattataatttt |
52082794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 3901522 - 3901188
Alignment:
| Q |
18 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3901522 |
actcaatacttatcttcatctcacaaatccccatacccgaattcaaagcacactacatagtcatcctgaaacccataaatccctaaatcatgaaattctc |
3901423 |
T |
|
| Q |
118 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3901422 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
3901323 |
T |
|
| Q |
218 |
agcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
3901322 |
agcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttatcaagattagct |
3901223 |
T |
|
| Q |
318 |
tccgttgtatgacaattccccaagaactactctct |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3901222 |
tccgttgtatgacaattccccaagaactactctct |
3901188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 50488349 - 50488682
Alignment:
| Q |
18 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
117 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
50488349 |
actcaatactcatcttcatctcacaaatccccatacccgaattcaaagcacactacatagtcatcctgaa-cccataaatccctaaatcatgaaattctc |
50488447 |
T |
|
| Q |
118 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50488448 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttgaaaatgtctatgagaagggaagaagaagagaaaaa |
50488547 |
T |
|
| Q |
218 |
agcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagct |
317 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
50488548 |
agcaatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttatcaagattagct |
50488647 |
T |
|
| Q |
318 |
tccgttgtatgacaattccccaagaactactctct |
352 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50488648 |
tacgttgtatgacaattccccaagaactactctct |
50488682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 3900702 - 3900664
Alignment:
| Q |
248 |
ttatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
3900702 |
ttatatttaattcatgttttgtttaaaaattctaatttt |
3900664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 50489168 - 50489206
Alignment:
| Q |
248 |
ttatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
50489168 |
ttatatttaattcatgttttgtttaaaaattctaatttt |
50489206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 52176987 - 52176946
Alignment:
| Q |
244 |
aaaattatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
52176987 |
aaaattatatttaattcatgtttt-gttaaaaattataatttt |
52176946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 35153059 - 35153019
Alignment:
| Q |
244 |
aaaattatatttaattcatgttttatttaaaaattataatt |
284 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
35153059 |
aaaatcatatttaattcatgttttgttaaaaaattataatt |
35153019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 41411047 - 41411381
Alignment:
| Q |
18 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
41411047 |
actcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccataaatccctaaatgatgaaattctc |
41411146 |
T |
|
| Q |
118 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41411147 |
aattgtttacatgtccctagtttatttaaatcacgaatttgtcaaacccataaactttgaagttgaaaatgtctatgagaagggaagaagaagagaaaaa |
41411246 |
T |
|
| Q |
218 |
agcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagct |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41411247 |
agcgatgaattgaaacttgtttgacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagct |
41411346 |
T |
|
| Q |
318 |
tccgttgtatgacaattccccaagaactactctct |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41411347 |
tccgttgtatgacaattccccaagaactactctct |
41411381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 40560918 - 40560603
Alignment:
| Q |
18 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40560918 |
actcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccataaatccctaaatcatgaaattctc |
40560819 |
T |
|
| Q |
118 |
aattgtttacatgtcccc-agtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaa |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40560818 |
aattgtttacatgtcccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaa |
40560719 |
T |
|
| Q |
217 |
aagcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
40560718 |
aagcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacagatgacaatcttatcaagattagc |
40560619 |
T |
|
| Q |
317 |
ttccgttgtatgacaa |
332 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
40560618 |
ttcctttgtatgacaa |
40560603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 27974 - 27932
Alignment:
| Q |
244 |
aaaattatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
27974 |
aaaattatatttaattcatgtttaattaaaaaattctaatttt |
27932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 4053382 - 4053420
Alignment:
| Q |
248 |
ttatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4053382 |
ttatattaaattcatgttttatttaaaaattttaatttt |
4053420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 31943006 - 31943048
Alignment:
| Q |
244 |
aaaattatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
31943006 |
aaaatcatatttaattcatgttttattaaaaaattatattttt |
31943048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 41411867 - 41411905
Alignment:
| Q |
248 |
ttatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
41411867 |
ttatatttaattcatgttttgtttaaaaattctaatttt |
41411905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 19164634 - 19164598
Alignment:
| Q |
250 |
atatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
19164634 |
atatttaattcatgttttgtttaaaaattctaatttt |
19164598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 36412423 - 36412757
Alignment:
| Q |
18 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36412423 |
actcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacgcagtcatcctgaaacccataaatccctaaatcatgaaattctc |
36412522 |
T |
|
| Q |
118 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
36412523 |
aattgtttgcatgtccccagtttatttaaatcacgaatttgtcaaacccacaaactttgaaattgaaaacgtctatgagaagggaagaagaagagaaaaa |
36412622 |
T |
|
| Q |
218 |
agcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagct |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412623 |
agcgattgattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaagactagct |
36412722 |
T |
|
| Q |
318 |
tccgttgtatgacaattccccaagaactactctct |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412723 |
tccgttgtatgacaattccccaagaactactctct |
36412757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 36413239 - 36413277
Alignment:
| Q |
248 |
ttatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
36413239 |
ttatatttaattcatgttttgtttaaaaattctaatttt |
36413277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 11148739 - 11148966
Alignment:
| Q |
18 |
actcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctc |
117 |
Q |
| |
|
|||||||| | |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || | |||||||| ||||||||||||| |
|
|
| T |
11148739 |
actcaatagtcatctccatcccacaaatcctcatacccgaattcaaagcaaactacatagtcatcatgaaacacagaaatccctaagtcatgaaattctc |
11148838 |
T |
|
| Q |
118 |
aattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
217 |
Q |
| |
|
|| |||| | |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11148839 |
aaatgtt-atatgtccccagtttatttaaatcacgaatttgtcaaacccacaaattatgaagttggaaatgtctatgagaagggaagaagaagagaaaaa |
11148937 |
T |
|
| Q |
218 |
agcgatgaattgaaacttgtttaacgaaaa |
247 |
Q |
| |
|
||| ||||||||||||||| |||||||||| |
|
|
| T |
11148938 |
agcaatgaattgaaacttg-ttaacgaaaa |
11148966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 24704546 - 24704501
Alignment:
| Q |
244 |
aaaattatatttaattcatgttttatttaaaaattataattttctt |
289 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
24704546 |
aaaattatatttaatccatgttttgttaaaaaattataattttctt |
24704501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 19247835 - 19247871
Alignment:
| Q |
250 |
atatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
19247835 |
atatttaattcatgttatattaaaaaattataatttt |
19247871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 9521983 - 9522021
Alignment:
| Q |
248 |
ttatatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
9521983 |
ttatatttaattcatgttttttttaaaaattctaatttt |
9522021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 4894300 - 4894336
Alignment:
| Q |
250 |
atatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
4894300 |
atatttaattcatgttttattaaaaaattctaatttt |
4894336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 14254665 - 14254701
Alignment:
| Q |
250 |
atatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
14254665 |
atatttaattcatgttttattaaaaaattctaatttt |
14254701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 49459747 - 49459711
Alignment:
| Q |
250 |
atatttaattcatgttttatttaaaaattataatttt |
286 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
49459747 |
atatttaatttatgttttattaaaaaattataatttt |
49459711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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