View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_53 (Length: 347)
Name: NF11703_low_53
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 22750211 - 22749894
Alignment:
| Q |
20 |
gaagatggcagctattcgctgatatgtggacagatgagataaaagcataacgagcgaaggagagcgcctgtctgttgggcttgtcagattaattgtttat |
119 |
Q |
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| T |
22750211 |
gaagatggcagctattcgctgatatgtggacagatgagataaaagcataacgagcgaagcagagcgcctgtcctttgggcttgtccgattaattgtttat |
22750112 |
T |
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| Q |
120 |
tacgttccaacttataactaagagggtcgggggtgaagccctcgattaggggtaaactagtaaacttcgctgcgagttttaaacaatgtactttatgaca |
219 |
Q |
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|| ||||||||||| |||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22750111 |
taggttccaacttacaactaagatggtcgggggcgaagccctctattaggggttaactagtaaacttcgctgcgagttttaaacaatgtactttgtgaca |
22750012 |
T |
|
| Q |
220 |
ctaatttgttgcataacagaaaacatacagaagccaccctgctctcgtagacgtaggaacaattgagcgaactccatgactaaatgatgtgttctcccgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
22750011 |
ctaatttgttgcataacagaaaacatacagaagccaccctgctctcgtagacgtaggaacaattgagcgaactccatgaccaaacgatgtgttctcccgt |
22749912 |
T |
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| Q |
320 |
gtttattttcttcctttg |
337 |
Q |
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|||||||||||||||||| |
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| T |
22749911 |
gtttattttcttcctttg |
22749894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 22688857 - 22689173
Alignment:
| Q |
20 |
gaagatggcagctattcgctgatatgtggacagatgagataaaagcataacgagcgaaggagagc-gcctgtctgttgggcttgtcagattaattgttta |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||| |
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| T |
22688857 |
gaagatgggagctattcgctgatatgtggacagatgagataaaagcataacgagcgaagcagagccgcctgtcctttgggcttgtccgattaattgttta |
22688956 |
T |
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| Q |
119 |
ttacgttccaacttataactaagagggtcgggggtgaagccctcgattaggggtaaactagtaaacttcgctgcgagttttaaacaatgtactttatgac |
218 |
Q |
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||| ||||||||||| |||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22688957 |
ttaggttccaacttacaactaagatggtcgggggcgaagccctctattaggggttaactagtaaacttcgctgcgagttttaaacaatgtactttgtgac |
22689056 |
T |
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| Q |
219 |
actaatttgttgcataacagaaaacatacagaagccaccctgctctcgtagacgtaggaacaattgagcgaactccatgactaaatgatgtgttctcccg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
22689057 |
actaatttgttgcataacagaaaacatacagaagccaccctgctctcgtagacgtaggaacaattgagcgaactccatgaccaaacgatgtgttctcccg |
22689156 |
T |
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| Q |
319 |
tgtttattttcttcctt |
335 |
Q |
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||||||||||||||||| |
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| T |
22689157 |
tgtttattttcttcctt |
22689173 |
T |
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