View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_55 (Length: 345)
Name: NF11703_low_55
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 330
Target Start/End: Complemental strand, 27760401 - 27760093
Alignment:
| Q |
21 |
gacaagtttaccaaccctgtgaggagatttgcctgcataaaattgttagaggaaattgtaaaatgaaatcaagatagagaaggcatatataattatagcc |
120 |
Q |
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| T |
27760401 |
gacaagtttaccaacccagtgagaagatttgcctgcataaaattatta-aggaaattataaaatgaaatcaagatagagaaggcatatataataatcgtc |
27760303 |
T |
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| Q |
121 |
gaggattatattgtttaccagaagaaatgtagcgagtaagttccgattaaatgcttcttcaagtaatgaagttttacttccaggaataagatcgaccaat |
220 |
Q |
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| T |
27760302 |
gaggaatatattgtttaccagaagaaatgtagcgagtaagttccgattaaatgcttcttcaagtactgaagttttacttccaggaataagatcggccagt |
27760203 |
T |
|
| Q |
221 |
gttagaattgacaatagctgaaaatgggtgacactcggattaaatactcgaatcaaatccaaaatcagatgtcaaattatcaattacaatgtcggatata |
320 |
Q |
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| T |
27760202 |
gttagaattgacaatagctgaaaaagagtgacattcagattaaatactcgaatcaaatccaaaatcagatgtcaaattaacaattacaatgtcggatata |
27760103 |
T |
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| Q |
321 |
gctcaagtat |
330 |
Q |
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|||||||||| |
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| T |
27760102 |
gctcaagtat |
27760093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 100 - 332
Target Start/End: Complemental strand, 45314423 - 45314191
Alignment:
| Q |
100 |
aaggcatatataattatagccgaggattatattgtttaccagaagaaatgtagcgagtaagttccgattaaatgcttcttcaagtaatgaagttttactt |
199 |
Q |
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| T |
45314423 |
aaggcatatataataatagccgaggattatattgtttaccacaagaaatgtagcgagtaagttccgattaaatgcttcttcaagtactgtagttttactt |
45314324 |
T |
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| Q |
200 |
ccaggaataagatcgaccaatgttagaattgacaatagctgaaaatgggtgacactcggattaaatactcgaatcaaatccaaaatcagatgtcaaatta |
299 |
Q |
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| T |
45314323 |
ccaggaataagatcggccaatgttagaattgacaatagctgaaaatgggtgacactcggattaaatactcgaatcaaatccaaaatcagatgtcaaatta |
45314224 |
T |
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| Q |
300 |
tcaattacaatgtcggatatagctcaagtatct |
332 |
Q |
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|||||||||||| || || |||||||||||||| |
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| T |
45314223 |
tcaattacaatgccgtatgtagctcaagtatct |
45314191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 45314477 - 45314422
Alignment:
| Q |
20 |
cgacaagtttaccaaccctgtgaggagatttgcctgcataaaattgttagaggaaa |
75 |
Q |
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| T |
45314477 |
cgacaagtttaccaaccctgtgaggagatttgcctgcataaaattgttagaggaaa |
45314422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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