View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_56 (Length: 344)

Name: NF11703_low_56
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_56
NF11703_low_56
[»] chr6 (5 HSPs)
chr6 (12-276)||(10150513-10150777)
chr6 (19-79)||(8566982-8567041)
chr6 (19-79)||(13353202-13353262)
chr6 (19-79)||(19639136-19639196)
chr6 (19-79)||(33796327-33796387)
[»] chr7 (5 HSPs)
chr7 (134-269)||(33196454-33196589)
chr7 (19-98)||(48243441-48243520)
chr7 (19-69)||(21861295-21861345)
chr7 (19-76)||(4454777-4454834)
chr7 (19-79)||(29469606-29469666)
[»] chr2 (2 HSPs)
chr2 (19-79)||(14466433-14466493)
chr2 (19-76)||(44403952-44404009)
[»] chr3 (2 HSPs)
chr3 (23-82)||(42420829-42420888)
chr3 (23-83)||(27484844-27484904)
[»] chr4 (3 HSPs)
chr4 (19-69)||(31254440-31254490)
chr4 (167-243)||(38823227-38823303)
chr4 (167-243)||(41209685-41209761)
[»] scaffold0459 (1 HSPs)
scaffold0459 (19-76)||(13334-13391)
[»] scaffold0366 (2 HSPs)
scaffold0366 (19-76)||(10975-11032)
scaffold0366 (19-76)||(14641-14698)
[»] scaffold0050 (1 HSPs)
scaffold0050 (27-76)||(51616-51665)
[»] scaffold0519 (2 HSPs)
scaffold0519 (19-79)||(1917-1977)
scaffold0519 (19-79)||(2152-2212)
[»] chr8 (2 HSPs)
chr8 (19-79)||(11232217-11232277)
chr8 (19-79)||(11232452-11232512)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 10150777 - 10150513
Alignment:
Q  12 gagataagacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgtcagagccaaccatggttttaaaaagaaagtca 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  10150777 gagataagacaatgtgtttttaattgagaacaatcctctccttacaaaccggttttgtagggatgtgtcagaaccaaccatagttttaaaaagaaagtca 10150678  T
Q  112 agaatataaatttgaaaagtcaagaatataaataacctcaggatggtatctgatccctcctttcataggacctctagagttatcatgttgaatcctgaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  10150677 agaatataaatttgaaaagtcaagaatataaataacctcaggatggtatctgatccctcctttcatagggcctctagagttatcatgttgaattctgaat 10150578  T
Q  212 ccaacataagtagccaaggttccatcatctttagggatgctacactcaacctgaatttgcattaa 276  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  10150577 ccaacatatgtagccaaggttccatcatctttagggatgctacactccacctgaattttcattaa 10150513  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 8567041 - 8566982
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| || |||||||| ||| ||||||||||||||| ||| |||||    
T  8567041 gacaatgtgtttataagtggga-caatcctcacctcacaaaccggttttgtggggttgtgt 8566982  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 13353202 - 13353262
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| |  |||||||| |||||||| |||||||||| ||| |||||    
T  13353202 gacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgt 13353262  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 19639196 - 19639136
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| | ||||||||| ||| |||||||||||| || ||| |||||    
T  19639196 gacaatgtgtttataagtggggacaatcctcacctcacaaaccggtttagtggggctgtgt 19639136  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 33796327 - 33796387
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| |  |||||||| |||||||| |||||||||| ||| |||||    
T  33796327 gacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgt 33796387  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 269
Target Start/End: Complemental strand, 33196589 - 33196454
Alignment:
Q  134 agaatataaataacctcaggatggtatctgatccctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||  |||||||||| |||||    ||| || |    
T  33196589 agaatataaataacctcaggatggtatctgatccctcctttcatagggcctctagcattatcatgttgaactctgaatccaatataagattgcaacgtgc 33196490  T
Q  234 catcatctttagggatgctacactcaacctgaattt 269  Q
    | ||||||||||| ||| |||| |||||||||||||    
T  33196489 cgtcatctttaggaatggtacattcaacctgaattt 33196454  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 48243520 - 48243441
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgtcagagccaaccatggtttt 98  Q
    |||||||||||| |||||| |  ||||||||  ||||||| |||||||||| ||| ||||| ||| ||||||||| ||||    
T  48243520 gacaatgtgtttataagtgggggcaatcctcatcttacaagccggttttgtggggttgtgttagacccaaccatgatttt 48243441  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 21861295 - 21861345
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgt 69  Q
    |||||||||||| ||||||||  |||||||| |||||||| ||||||||||    
T  21861295 gacaatgtgtttataagtgagggcaatcctcaccttacaagccggttttgt 21861345  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 4454777 - 4454834
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatg 76  Q
    |||||||||||| |||||| |  |||||||| ||| |||||||||||||||| |||||    
T  4454777 gacaatgtgtttataagtgggggcaatcctcacctcacaaaccggttttgtaaggatg 4454834  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 29469606 - 29469666
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| |  |||||||| |||||||| |||||||||| ||| |||||    
T  29469606 gacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgt 29469666  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14466493 - 14466433
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| || |||||||| |||||||| |||||||||| ||| |||||    
T  14466493 gacaatgtgtttataagtgggagcaatcctcaccttacaagccggttttgtggggttgtgt 14466433  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 44404009 - 44403952
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatg 76  Q
    |||||||||||| ||||||||  |||||||| ||| |||||| ||||||||| |||||    
T  44404009 gacaatgtgtttgtaagtgagtgcaatcctcacctcacaaactggttttgtaaggatg 44403952  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 42420829 - 42420888
Alignment:
Q  23 atgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgtcag 82  Q
    |||||||| |||||| || ||||| || ||||||||||| ||||||||||| ||||||||    
T  42420829 atgtgtttataagtgggagcaatcttcaccttacaaaccagttttgtagggttgtgtcag 42420888  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 27484904 - 27484844
Alignment:
Q  23 atgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgtcaga 83  Q
    |||||||| ||||||||| |||| ||| | ||| ||||||||||||| ||| |||||||||    
T  27484904 atgtgtttataagtgagatcaattctcactttataaaccggttttgtggggttgtgtcaga 27484844  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 31254490 - 31254440
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgt 69  Q
    |||||||||||| |||||| |  |||||||| |||||||||||||||||||    
T  31254490 gacaatgtgtttataagtgggggcaatcctcaccttacaaaccggttttgt 31254440  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 38823303 - 38823227
Alignment:
Q  167 cctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttccatcatcttt 243  Q
    ||||||||||| ||||| | ||  || |||||||| ||||| || |||||||||| | |||| ||||||||||||||    
T  38823303 cctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatcttt 38823227  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 41209761 - 41209685
Alignment:
Q  167 cctcctttcataggacctctagagttatcatgttgaatcctgaatccaacataagtagccaaggttccatcatcttt 243  Q
    ||||||||||| ||||| | ||  || |||||||| ||||| || |||||||||| | |||| ||||||||||||||    
T  41209761 cctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatcttt 41209685  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 13334 - 13391
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatg 76  Q
    |||||||||||| ||||||||  |||||||| ||| |||||| ||||||||| |||||    
T  13334 gacaatgtgtttgtaagtgagtgcaatcctcacctcacaaactggttttgtaaggatg 13391  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 10975 - 11032
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatg 76  Q
    |||||||||||| ||||||||  |||||||| ||| |||||| ||||||||| |||||    
T  10975 gacaatgtgtttgtaagtgagtgcaatcctcacctcacaaactggttttgtaaggatg 11032  T

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Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 14641 - 14698
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatg 76  Q
    |||||||||||| ||||||||  |||||||| ||| |||||| ||||||||| |||||    
T  14641 gacaatgtgtttgtaagtgagtgcaatcctcacctcacaaactggttttgtaaggatg 14698  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 51616 - 51665
Alignment:
Q  27 gtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatg 76  Q
    |||| ||||||||  |||||||| |||||||||||||||||||| |||||    
T  51616 gtttgtaagtgagttcaatcctcgccttacaaaccggttttgtaaggatg 51665  T

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Target: scaffold0519 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 1917 - 1977
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| |  |||||||| |||||||| |||||||||| ||| |||||    
T  1917 gacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgt 1977  T

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Target: scaffold0519; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 2152 - 2212
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| |  |||||||| |||||||| |||||||||| ||| |||||    
T  2152 gacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgt 2212  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 11232277 - 11232217
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| |  |||||||| |||||||| |||||||||| ||| |||||    
T  11232277 gacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgt 11232217  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 11232512 - 11232452
Alignment:
Q  19 gacaatgtgtttttaagtgagaacaatcctctccttacaaaccggttttgtagggatgtgt 79  Q
    |||||||||||| |||||| |  |||||||| |||||||| |||||||||| ||| |||||    
T  11232512 gacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgt 11232452  T

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