View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_58 (Length: 338)
Name: NF11703_low_58
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 8103830 - 8104026
Alignment:
| Q |
1 |
taaggtaagcacaaaactttttaaaattttggttcttcctaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatatagaag |
100 |
Q |
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|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8103830 |
taagataagcacaaaactttttaaaattttgattcttggtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatatagaag |
8103929 |
T |
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| Q |
101 |
gattatatatagtactgctgaagttaaatcat---aacgctattgcatataatataaacacgacttgacttcttaacattacttggtcgtgaaacct |
194 |
Q |
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| T |
8103930 |
gattatatatagtactgttgaagttaaattattacaacactattgcatataatataaacacgacttgacttcttaacattacttgatcgtgaaacct |
8104026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 197 - 321
Target Start/End: Original strand, 8104324 - 8104448
Alignment:
| Q |
197 |
tatttatatgcttcaagatttttggtttttctaccgcttctaattgattgttgttggagtaggagatactattttgttgtatttgacattttgacttgac |
296 |
Q |
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| T |
8104324 |
tatttatatgcttcaagatttttggtttttctaccgcttctaattgattgttgttggagtaggagatactattttgttgtatttgacattttgacttggc |
8104423 |
T |
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| Q |
297 |
tttaatacaaaatgctagttaaagg |
321 |
Q |
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| T |
8104424 |
tttaatacaaaatgctagttaaagg |
8104448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8102332 - 8102443
Alignment:
| Q |
1 |
taaggtaagcacaaaactttttaaaattttggttcttcctaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatatagaag |
100 |
Q |
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|||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8102332 |
taagataagcacaaaactttttaaaattttgattcttcgtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacgataataatatagaag |
8102431 |
T |
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| Q |
101 |
gattatatatag |
112 |
Q |
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|||||||||||| |
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| T |
8102432 |
gattatatatag |
8102443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 8099562 - 8099484
Alignment:
| Q |
1 |
taaggtaagcacaaaactttttaaaattttggttcttcctaatttgcaactagtgtattttcccttttgcagcttaaac |
79 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8099562 |
taagataagcacaaaactttttaaaattttggttcttcgtaatttgcaactagtgtattttcccttttgcagcttaaac |
8099484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 21261245 - 21261329
Alignment:
| Q |
24 |
aaattttggttcttcctaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatatagaaggattatata |
109 |
Q |
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||||||||||||| | |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||| |||||||| |
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| T |
21261245 |
aaattttggttctgcataatttgcaactagtgtatttt-cctttggcagattaaaccaaacaataataatatcgaagaattatata |
21261329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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