View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_6 (Length: 731)

Name: NF11703_low_6
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_6
NF11703_low_6
[»] chr3 (11 HSPs)
chr3 (53-213)||(6267143-6267303)
chr3 (283-403)||(6177591-6177711)
chr3 (283-402)||(6267373-6267490)
chr3 (450-550)||(6178872-6178972)
chr3 (485-590)||(6269998-6270103)
chr3 (287-371)||(6178683-6178767)
chr3 (283-344)||(6260438-6260500)
chr3 (71-137)||(6178497-6178563)
chr3 (111-176)||(6177426-6177491)
chr3 (510-550)||(6260560-6260600)
chr3 (82-111)||(6260252-6260281)
[»] chr7 (1 HSPs)
chr7 (644-680)||(37701322-37701358)
[»] chr2 (2 HSPs)
chr2 (640-679)||(4983993-4984032)
chr2 (645-680)||(12232359-12232394)
[»] chr4 (1 HSPs)
chr4 (586-628)||(25812372-25812414)
[»] chr1 (1 HSPs)
chr1 (590-628)||(8258904-8258942)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 4e-71; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 6267143 - 6267303
Alignment:
Q  53 agtaggaatcaaactataattataaaattattattttaatcttaactaaaaaagcacaagggaaagccatcaatttaagatatgaaggcttgaatatatt 152  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  6267143 agtaggaatcaaagtataactataaaattattattttaatcttaactataaaagcacaagggaaagccaccaattaaagatatgaaggcttgaatatatt 6267242  T
Q  153 agaagatgggatctataattcagctgttacgacatgagcaagtaatcacaagaaaacattc 213  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6267243 agaagatgggatgtataattcagctgttacgacatgagcaagtaatcacaagaaaacattc 6267303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 283 - 403
Target Start/End: Original strand, 6177591 - 6177711
Alignment:
Q  283 gttcaatgaacagaagaaaatgaagaaacatttggaagaaaatattacctctagaattaatggttgttgtggataattcagcagtgactgagcacaagag 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6177591 gttcaatgaacagaagaaaatgaagaaacatttggaagaaaatattacctctagaattaatggttgttgtggataattcagcagtgactgaacacaagag 6177690  T
Q  383 catgcaagattaggttggatc 403  Q
    ||||||||| ||||| |||||    
T  6177691 catgcaagaataggtaggatc 6177711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 283 - 402
Target Start/End: Original strand, 6267373 - 6267490
Alignment:
Q  283 gttcaatgaacagaagaaaatgaagaaacatttggaagaaaatattacctctagaattaatggttgttgtggataattcagcagtgactgagcacaagag 382  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  | |||| |||||||||| ||| ||||    
T  6267373 gttcaatgaacagaagaaaatgaagaaacatttggaagaaaatcttacctctagaattaatggttgctgtgg--agttcaacagtgactgaacacgagag 6267470  T
Q  383 catgcaagattaggttggat 402  Q
    ||||||||||||||||||||    
T  6267471 catgcaagattaggttggat 6267490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 450 - 550
Target Start/End: Original strand, 6178872 - 6178972
Alignment:
Q  450 aaagttaaaacaagtggtgggaaggttccacttggtcaacatgactcaacaacaagaagggtgttacgaagctacttgcatataggtggacccatctggt 549  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||||    
T  6178872 aaagttaaaacaagtggtaggaaggttccacatggtcaacatgactcaagaacaggaagggtgttatgaagttacttgcatataggtggacccatctggt 6178971  T
Q  550 a 550  Q
    |    
T  6178972 a 6178972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 485 - 590
Target Start/End: Original strand, 6269998 - 6270103
Alignment:
Q  485 tcaacatgactcaacaacaagaagggtgttacgaagctacttgcatataggtggacccatctggtatatactagctggtttcatccagtatggggagagg 584  Q
    |||||||||| ||| |||||||||| ||||||||| ||||||||||| |||||||||||| ||||||  ||||||| |||||||||||| ||||||| ||    
T  6269998 tcaacatgacccaagaacaagaaggttgttacgaaactacttgcatagaggtggacccatgtggtatcaactagctagtttcatccagtctggggagtgg 6270097  T
Q  585 gtgatg 590  Q
    ||||||    
T  6270098 gtgatg 6270103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 6178683 - 6178767
Alignment:
Q  287 aatgaacagaagaaaatgaagaaacatttggaagaaaatattacctctagaattaatggttgttgtggataattcagcagtgact 371  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||  | | |||||||||||||    
T  6178683 aatgaacagtagaaaatgaagaaacaattggaagaaaatattacctttagaattaaaggttgttgtttagagttcagcagtgact 6178767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 6260438 - 6260500
Alignment:
Q  283 gttcaatgaa-cagaagaaaatgaagaaacatttggaagaaaatattacctctagaattaatg 344  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6260438 gttcaatgaaacagtagaaaatgaagaaacatttggaagaaaatattacctctagaattaatg 6260500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 6178497 - 6178563
Alignment:
Q  71 attataaaattattattttaatcttaactaaaaaagcacaagggaaagccatcaatttaagatatga 137  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| |||||| |||| |||||||||    
T  6178497 attataaaattactattttaatcttaactaaaaatgcacaagggagagccattaattaaagatatga 6178563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 6177426 - 6177491
Alignment:
Q  111 agggaaagccatcaatttaagatatgaaggcttgaatatattagaagatgggatctataattcagc 176  Q
    |||| ||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6177426 aggggaagccgttaattaaagatatgaaggcttgaatatattagaagatgggatcaataattcagc 6177491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 6260560 - 6260600
Alignment:
Q  510 gtgttacgaagctacttgcatataggtggacccatctggta 550  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  6260560 gtgttacgaagctacttgcatataggtggagccatctggta 6260600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 111
Target Start/End: Original strand, 6260252 - 6260281
Alignment:
Q  82 attattttaatcttaactaaaaaagcacaa 111  Q
    ||||||||||||||||||||||||||||||    
T  6260252 attattttaatcttaactaaaaaagcacaa 6260281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 644 - 680
Target Start/End: Complemental strand, 37701358 - 37701322
Alignment:
Q  644 cggtagttaactaacgtcgattttttagttataagtc 680  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37701358 cggtagttaactaccgtcgattttttagttataagtc 37701322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 4983993 - 4984032
Alignment:
Q  640 tcagcggtagttaactaacgtcgattttttagttataagt 679  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  4983993 tcagcggtagttaactaccgtcgattttctagttataagt 4984032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 680
Target Start/End: Complemental strand, 12232394 - 12232359
Alignment:
Q  645 ggtagttaactaacgtcgattttttagttataagtc 680  Q
    |||||||||||| |||||||||||||||||||||||    
T  12232394 ggtagttaactaccgtcgattttttagttataagtc 12232359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 628
Target Start/End: Complemental strand, 25812414 - 25812372
Alignment:
Q  586 tgatgttttcacattcattgcttcctaaaaacacatgaaaatg 628  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||    
T  25812414 tgatgtttttacattcattgtttcctaaaaacacgtgaaaatg 25812372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 590 - 628
Target Start/End: Original strand, 8258904 - 8258942
Alignment:
Q  590 gttttcacattcattgcttcctaaaaacacatgaaaatg 628  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  8258904 gttttcacatccattgtttcctaaaaacacatgaaaatg 8258942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University