View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_60 (Length: 314)

Name: NF11703_low_60
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_60
NF11703_low_60
[»] chr3 (12 HSPs)
chr3 (11-314)||(48840443-48840745)
chr3 (137-314)||(50904652-50904825)
chr3 (126-314)||(38044010-38044192)
chr3 (202-314)||(55084893-55085005)
chr3 (230-314)||(50910067-50910151)
chr3 (202-311)||(38028687-38028796)
chr3 (202-311)||(38040002-38040111)
chr3 (202-295)||(38033696-38033789)
chr3 (202-311)||(38036714-38036823)
chr3 (257-314)||(50911845-50911902)
chr3 (230-314)||(38024824-38024908)
chr3 (230-314)||(38031276-38031360)
[»] chr8 (4 HSPs)
chr8 (202-311)||(21604675-21604784)
chr8 (230-314)||(21607245-21607329)
chr8 (263-314)||(21634650-21634701)
chr8 (202-282)||(21609725-21609805)
[»] chr4 (29 HSPs)
chr4 (233-314)||(17970406-17970487)
chr4 (265-311)||(27444778-27444824)
chr4 (265-314)||(27466928-27466977)
chr4 (265-314)||(27559224-27559273)
chr4 (265-314)||(27567362-27567411)
chr4 (272-313)||(27600661-27600702)
chr4 (265-312)||(27557598-27557645)
chr4 (264-314)||(27460585-27460635)
chr4 (272-314)||(27563337-27563379)
chr4 (272-314)||(27585795-27585837)
chr4 (265-314)||(27473999-27474048)
chr4 (265-314)||(27480008-27480057)
chr4 (268-313)||(27495644-27495689)
chr4 (265-314)||(27513760-27513809)
chr4 (265-314)||(27526096-27526145)
chr4 (282-314)||(27571730-27571762)
chr4 (271-314)||(27412771-27412814)
chr4 (271-314)||(27504029-27504072)
chr4 (265-311)||(27431132-27431178)
chr4 (264-314)||(27476794-27476844)
chr4 (265-311)||(27505686-27505732)
chr4 (265-311)||(27516593-27516639)
chr4 (281-314)||(27411456-27411489)
chr4 (265-314)||(27419055-27419104)
chr4 (281-314)||(27421931-27421964)
chr4 (265-314)||(27487090-27487139)
chr4 (265-314)||(27502119-27502168)
chr4 (265-314)||(27554416-27554465)
chr4 (282-314)||(27498522-27498554)
[»] chr2 (1 HSPs)
chr2 (233-314)||(3073676-3073757)
[»] chr5 (2 HSPs)
chr5 (271-314)||(1754795-1754838)
chr5 (265-311)||(1759362-1759408)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 48840443 - 48840745
Alignment:
Q  11 cacagaggagccagttgagttgttgaaacactgtgtcattacgattagacagaaattatggagaggaaaataacttgttacgtagtatgtcattcagatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48840443 cacagaggagccagttgagttgttgaaacactgtgtcattacgattagacagaaattatggagaggaaaataacttgttacgtagtatgtcattcagatg 48840542  T
Q  111 gacatgtttcacccattcccgataaagggaaaaggaaaaatatttacaagtgtaaaataataaaatatgcctgttgtagaaaatatcactactaatctat 210  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48840543 gacatgtttcacccattcccgataaagggaaaaggaaaa-tatttacaagtgtaaaataataaaatatgcctgttgtagaaaatatcactactaatctat 48840641  T
Q  211 gtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48840642 gtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgaggccacccattggat 48840741  T
Q  311 gatc 314  Q
    ||||    
T  48840742 gatc 48840745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 137 - 314
Target Start/End: Original strand, 50904652 - 50904825
Alignment:
Q  137 gggaaaaggaaaaatatttacaagtgtaaaataataaaatatgcctgttgtagaaaatatcactactaatctatgtcagtatcttccagttttagattta 236  Q
    |||||||||||||||||||||||||||||||    |||| | |||| ||||  ||||| ||||||||||||||||||| | |||| ||| |  |||||||    
T  50904652 gggaaaaggaaaaatatttacaagtgtaaaa----aaaaaacgcctattgttcaaaatgtcactactaatctatgtcactctcttgcagctgcagattta 50904747  T
Q  237 tagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
     ||||||||||||| |  ||| || ||||| ||||| |||||| |||||||||| ||||| |||||||||||||||||    
T  50904748 cagcccattgaagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatc 50904825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 126 - 314
Target Start/End: Complemental strand, 38044192 - 38044010
Alignment:
Q  126 ttcccgataaagggaaaaggaaaaatatttacaagtgtaaaataataaaatatgcctgttgtagaaaatatcactactaatctatgtcagtatcttccag 225  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||      |||||| ||||  ||||| |||| |||||||||||||||| | || |||    
T  38044192 ttcccaataaagggaaaaggaaaaatatttacaagtgtaaaaaaa------atgcctattgttcaaaatgtcacgactaatctatgtcagtcttttgcag 38044099  T
Q  226 ttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
     |  || | |||| ||||||||||| |  |||||   ||||||||||| |||| ||||||||||||||||| || ||||||||||||||    
T  38044098 ctgcagctctatatcccattgaagcgagaagtaacacgcaagaaaacaccttcggtgcaaggaattgtgaggccgcccattggatgatc 38044010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 55085005 - 55084893
Alignment:
Q  202 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 301  Q
    ||||||||||||| | |||| |||| | ||||||||||  ||||||||| |  |||||| || |||||||||||||||||||||||||||||||| ||||    
T  55085005 ctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccac 55084906  T
Q  302 ccattggatgatc 314  Q
    |||||||||||||    
T  55084905 ccattggatgatc 55084893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 50910151 - 50910067
Alignment:
Q  230 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||| ||||||||| |  |||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  50910151 agatttatagctcattgaagcgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatc 50910067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 38028687 - 38028796
Alignment:
Q  202 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 301  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||| ||||||||||||||||||||||| || |    
T  38028687 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 38028786  T
Q  302 ccattggatg 311  Q
    ||||||||||    
T  38028787 ccattggatg 38028796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 38040002 - 38040111
Alignment:
Q  202 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 301  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||| ||||||||||||||||||||||| || |    
T  38040002 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 38040101  T
Q  302 ccattggatg 311  Q
    ||||||||||    
T  38040102 ccattggatg 38040111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 38033696 - 38033789
Alignment:
Q  202 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtga 295  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||| |  |||||| ||||||||||||||||||||||| ||||||||||    
T  38033696 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtga 38033789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 38036714 - 38036823
Alignment:
Q  202 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 301  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||| | ||||||||||||||||||||| || |    
T  38036714 ctaatctatgtcagtctcctatagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgc 38036813  T
Q  302 ccattggatg 311  Q
    ||||||||||    
T  38036814 ccattggatg 38036823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 50911845 - 50911902
Alignment:
Q  257 taatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||    
T  50911845 taatgtgcaagaaaacaccttctgtgcaaggaattgttaggccacccattgggtgatc 50911902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 38024824 - 38024908
Alignment:
Q  230 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||||||||||||| |  |||||| | || |||||  ||||||||||||||||| ||||| ||||||||||| |||||    
T  38024824 agatttatagcccattgaagcgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatc 38024908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 38031276 - 38031360
Alignment:
Q  230 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||||||||||||| |  |||||| | || |||||  ||||||||||||||||| ||||| ||||||||||| |||||    
T  38031276 agatttatagcccattgaagcgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatc 38031360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 21604675 - 21604784
Alignment:
Q  202 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 301  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||| ||||||||||||||||||||||| || |    
T  21604675 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 21604774  T
Q  302 ccattggatg 311  Q
    ||||||||||    
T  21604775 ccattggatg 21604784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 21607245 - 21607329
Alignment:
Q  230 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||||||||||||| |  |||||| | || ||||| |||||||||||||||||  ||||| ||||||||||| |||||    
T  21607245 agatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaaccgtgaggccacccattgggtgatc 21607329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 21634701 - 21634650
Alignment:
Q  263 gcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||||||||||| ||||||||||||||||  || |||||| |||||||    
T  21634701 gcaagaaaacatcttcggtgcaaggaattgtgaagccgcccattcgatgatc 21634650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 21609725 - 21609805
Alignment:
Q  202 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtg 282  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||  |||||||||    
T  21609725 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaatgtcttctgtg 21609805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 17970487 - 17970406
Alignment:
Q  233 tttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||| ||||||||||||  |||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17970487 tttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatc 17970406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 27444778 - 27444824
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 311  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  27444778 aagaaaacgtcttctctgcaaggaattgtgagaccacccattggatg 27444824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 27466977 - 27466928
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  27466977 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatc 27466928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 27559224 - 27559273
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  27559224 aagaaagcatcttcactgcaaggaattgtgagaccacccattggatgatc 27559273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 27567411 - 27567362
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  27567411 aagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatc 27567362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 27600702 - 27600661
Alignment:
Q  272 catcttctgtgcaaggaattgtgagaccacccattggatgat 313  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  27600702 catcttctttgcaaggaattgtgagaccacccattggatgat 27600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 27557645 - 27557598
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatga 312  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  27557645 aagaaaacatcttctctgcatggaatagtgagaccacccattggatga 27557598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 27460635 - 27460585
Alignment:
Q  264 caagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||  |||||| |||||||||| |||||||||||||||||||||||    
T  27460635 caagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatc 27460585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 27563337 - 27563379
Alignment:
Q  272 catcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  27563337 catcttcagtgcaaggaattgtgaggccacccattggatgatc 27563379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 27585837 - 27585795
Alignment:
Q  272 catcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||||||||||| |||||||| ||||||||||||||    
T  27585837 catcttctgtgcaaggaatggtgagacctcccattggatgatc 27585795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 27474048 - 27473999
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||| ||||||  ||||||||| |||||||||||||||||||||||    
T  27474048 aagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatc 27473999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 27480057 - 27480008
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||  |||||| |||||||||| |||||||||||||||||||||||    
T  27480057 aagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatc 27480008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 27495689 - 27495644
Alignment:
Q  268 aaaacatcttctgtgcaaggaattgtgagaccacccattggatgat 313  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||    
T  27495689 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 27495644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 27513760 - 27513809
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||| || |||||| |||||||||| |||||||||||||||||||||||    
T  27513760 aagaatacttcttctctgcaaggaatagtgagaccacccattggatgatc 27513809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 27526096 - 27526145
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||| |||||| |||||||||| |||||||||||| ||||||||||    
T  27526096 aagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatc 27526145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 27571762 - 27571730
Alignment:
Q  282 gcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||||||||||||||||||||||||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatc 27571730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 27412814 - 27412771
Alignment:
Q  271 acatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||    
T  27412814 acatcttccgtgcaaggaatggtgaggccacccattggatgatc 27412771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 27504072 - 27504029
Alignment:
Q  271 acatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||    
T  27504072 acatcttcggtgcaaggaatggtgaggccacccattggatgatc 27504029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 27431132 - 27431178
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 311  Q
    |||||||| |||||| ||||||||||||||||||||||  |||||||    
T  27431132 aagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatg 27431178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 27476844 - 27476794
Alignment:
Q  264 caagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||  |||||| |||||||||| || ||||||||||||||||||||    
T  27476844 caagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatc 27476794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 27505686 - 27505732
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 311  Q
    |||||||  |||||| |||||||||| ||||||||||||||||||||    
T  27505686 aagaaaatctcttctctgcaaggaatagtgagaccacccattggatg 27505732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 27516593 - 27516639
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 311  Q
    |||||||| |||||| |||||||||| |||||||| |||||||||||    
T  27516593 aagaaaacttcttctttgcaaggaatagtgagaccccccattggatg 27516639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 27411456 - 27411489
Alignment:
Q  281 tgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||||||||||||||||| ||||||||    
T  27411456 tgcaaggaattgtgagaccacccataggatgatc 27411489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 27419055 - 27419104
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||| |||||||   |||||||||||| ||||||||||||||||||||    
T  27419055 aagaaagcatcttcaccgcaaggaattgtaagaccacccattggatgatc 27419104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 27421931 - 27421964
Alignment:
Q  281 tgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||||||||||||||| ||||||||||    
T  27421931 tgcaaggaattgtgagaccacccgttggatgatc 27421964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 27487139 - 27487090
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||  |||||| |||||||||| || ||||||||||||||||||||    
T  27487139 aagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatc 27487090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 27502119 - 27502168
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||  |||||| |||||||||| || ||||||||||||||||||||    
T  27502119 aagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatc 27502168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 27554465 - 27554416
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    |||||||| |||||| | |||||||||||||||| |||| ||||||||||    
T  27554465 aagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatc 27554416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 27498554 - 27498522
Alignment:
Q  282 gcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||| |||||||||||||||||||||||    
T  27498554 gcaaggaatagtgagaccacccattggatgatc 27498522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 3073757 - 3073676
Alignment:
Q  233 tttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||| ||||||||||||  |||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  3073757 tttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatc 3073676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 1754838 - 1754795
Alignment:
Q  271 acatcttctgtgcaaggaattgtgagaccacccattggatgatc 314  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||    
T  1754838 acatcttctgtgcaaagaatggtgaggccacccattggatgatc 1754795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 1759408 - 1759362
Alignment:
Q  265 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 311  Q
    |||||||| |||||| ||||| |||| ||||||||||||||||||||    
T  1759408 aagaaaacttcttctctgcaaagaatggtgagaccacccattggatg 1759362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University