View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_61 (Length: 312)

Name: NF11703_low_61
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_61
NF11703_low_61
[»] chr4 (40 HSPs)
chr4 (8-301)||(27554200-27554494)
chr4 (69-301)||(27444749-27444982)
chr4 (13-284)||(27557374-27557657)
chr4 (68-301)||(27431103-27431337)
chr4 (23-292)||(27501221-27501493)
chr4 (33-294)||(27526074-27526338)
chr4 (18-292)||(27498314-27498591)
chr4 (33-286)||(27486894-27487153)
chr4 (34-294)||(27513738-27514004)
chr4 (33-286)||(27479812-27480071)
chr4 (185-294)||(27473960-27474070)
chr4 (185-278)||(27502113-27502207)
chr4 (33-278)||(27505680-27505931)
chr4 (31-292)||(27502771-27503032)
chr4 (81-231)||(27570075-27570225)
chr4 (185-285)||(27516580-27516681)
chr4 (207-294)||(27466911-27466999)
chr4 (172-275)||(27567310-27567414)
chr4 (172-254)||(27411458-27411541)
chr4 (185-278)||(27460546-27460640)
chr4 (33-286)||(27476601-27476857)
chr4 (170-254)||(27571676-27571761)
chr4 (207-286)||(27523373-27523453)
chr4 (167-231)||(27527211-27527275)
chr4 (31-117)||(27507953-27508038)
chr4 (172-238)||(27508907-27508973)
chr4 (172-238)||(27524579-27524645)
chr4 (172-229)||(27415676-27415733)
chr4 (170-254)||(27419073-27419158)
chr4 (174-238)||(27490017-27490081)
chr4 (167-231)||(27506748-27506812)
chr4 (213-292)||(27507777-27507857)
chr4 (172-231)||(27478909-27478968)
chr4 (172-231)||(27485969-27486028)
chr4 (185-275)||(27500319-27500410)
chr4 (172-254)||(27563348-27563431)
chr4 (172-238)||(27424533-27424599)
chr4 (96-153)||(17970278-17970335)
chr4 (167-231)||(27497348-27497412)
chr4 (5-72)||(27516796-27516861)
[»] chr5 (3 HSPs)
chr5 (12-292)||(1754206-1754488)
chr5 (200-286)||(1759335-1759422)
chr5 (95-228)||(1756786-1756919)
[»] chr3 (10 HSPs)
chr3 (96-287)||(55084765-55084957)
chr3 (73-287)||(38024844-38025059)
chr3 (73-287)||(38031296-38031511)
chr3 (207-286)||(38028736-38028816)
chr3 (179-254)||(38043965-38044041)
chr3 (182-287)||(50910025-50910131)
chr3 (207-286)||(38040051-38040131)
chr3 (213-272)||(48840696-48840756)
chr3 (96-287)||(50904761-50904953)
chr3 (182-286)||(38036763-38036868)
[»] chr8 (3 HSPs)
chr8 (179-272)||(21634605-21634699)
chr8 (73-150)||(21607403-21607480)
chr8 (207-286)||(21604724-21604804)
[»] chr2 (1 HSPs)
chr2 (96-153)||(3073548-3073605)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 27554200 - 27554494
Alignment:
Q  8 tacaccaatatcttcttttcgcaagacatacaagaatgggttttcgtttacctggtatcctcaaaccaagcatcttcaaaaggagtggatgtgccaaagg 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554200 tacaccaatatcttcttttcacaagacatacaagaatgggttttcgtttacctggtatcctcaaaccaagcatcttcaaaaggagtggatgtgccaaagg 27554299  T
Q  108 gataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagctta 207  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27554300 gataccttgcagtatatgttggagaggaaatgaagcggtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagctga 27554399  T
Q  208 ggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttgaatctgtgct 301  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554400 ggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctcgtttgaatctgtgct 27554494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 301
Target Start/End: Complemental strand, 27444982 - 27444749
Alignment:
Q  69 caaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgtt 168  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||| | ||||||||||||||||  |||||||||  |||| || |  ||    
T  27444982 caaaccaaacatcttcaaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatactt 27444883  T
Q  169 aagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgtt 267  Q
     |||||| |||| |||||||||||  ||||||||||  |||||||||| |||||||| ||||||| |||| | |||||||||||||| ||||||||||||    
T  27444882 gagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgtt 27444783  T
Q  268 ttcttagatattacttctcgtttgaatctgtgct 301  Q
    ||||||||||||||||||||||||||||||||||    
T  27444782 ttcttagatattacttctcgtttgaatctgtgct 27444749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 27557374 - 27557657
Alignment:
Q  13 caatatcttcttttcgcaagacatacaagaatgggttttcgtttacctggtatcctca-----------aaccaagcatcttcaaaaggagtggatgtgc 101  Q
    |||| |||||||| | ||||||||| ||||||||||||||||||||||| |||| |||           ||||||||||||||||| || ||||||||||    
T  27557374 caatttcttctttccacaagacatataagaatgggttttcgtttacctgttatcatcagaagggcatcaaaccaagcatcttcaaagggtgtggatgtgc 27557473  T
Q  102 caaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatca 201  Q
    ||| |||||| ||||| | ||||| ||||||||||||||||  |||||||||  |||| || |  |||| ||||||||| ||||||||||||||||||||    
T  27557474 caaggggatatcttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatca 27557573  T
Q  202 agcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttc 284  Q
    |||| |||||||||||| ||||| |||||||| |||| | ||||| ||||| || |||||||| |||||||||||||| |||||    
T  27557574 agctgaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 68 - 301
Target Start/End: Complemental strand, 27431337 - 27431103
Alignment:
Q  68 tcaaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgt 167  Q
    ||||||||||||||||||||| |   | ||||||||||||||||  |||||| ||||| ||| || |||||||||  |||||||||  |||| || |  |    
T  27431337 tcaaaccaagcatcttcaaaatgcacgaatgtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatact 27431238  T
Q  168 taagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgt 266  Q
    | | |||||| || |||||||||||| ||||||||||  ||||||||||||||||||| |||||||| ||| | |||||||||||||| |||||||||||    
T  27431237 tgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgt 27431138  T
Q  267 tttcttagatattacttctcgtttgaatctgtgct 301  Q
    ||||||| |||||||||||||||||||||||||||    
T  27431137 tttcttaaatattacttctcgtttgaatctgtgct 27431103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 27501221 - 27501493
Alignment:
Q  23 ttttcgcaagacatacaagaatgggttttcgtttacctggtatcctca-aacca-agcatcttcaaaaggagtggatgtgccaaagggataccttgcaga 120  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| | ||  | | ||||||||||||| || || || ||||||||||  || ||||     
T  27501221 ttttcccaacacatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatgtctagcagt 27501320  T
Q  121 atatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttgga 220  Q
    ||||| ||||||||||||||| | |||||||||  |||| || |  |||| |||||||| ||||||||| ||| |||| |||||  |||||||||||| |    
T  27501321 atatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaa 27501420  T
Q  221 tatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttga 292  Q
    || ||||||||||||||| | ||||| |||||||||||||||||| | ||||||||||| |||||| ||||||    
T  27501421 tacgatcatccaacgggtggtctcactattccttgtagagaagacatgttcttagatatcacttcttgtttga 27501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 27526338 - 27526074
Alignment:
Q  33 acatacaagaatgggttttcgtttacctggtatcctcaaacca--agcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctgga 130  Q
    |||||||| ||||||||||||||||||| ||||| |||||     | ||||||||||||| || ||||| ||||||||||| || ||||  |||| ||||    
T  27526338 acatacaacaatgggttttcgtttacctagtatcatcaaaagggcatcatcttcaaaaggtgtcgatgttccaaagggatatctagcagtgtatgttgga 27526239  T
Q  131 gaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatc 230  Q
    ||| ||||||||| |||||||||  |  | || |  || | |||| | || || ||||||||| |||  |||||| |||||||||||| |||||||||||    
T  27526238 gagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaatttgaatatgatcatc 27526139  T
Q  231 caacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttgaat 294  Q
    |||||||| | ||||| |||||||| |||||||||||||||||||| || |||||||||||||||    
T  27526138 caacgggtggtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaat 27526074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 27498314 - 27498591
Alignment:
Q  18 tcttcttttcgcaagacatacaagaatgggttttcgtttacctggtatcctca-aacca-agcatcttcaaaaggagtggatgtgccaaagggatacctt 115  Q
    |||||||||  ||| |||||| | |||||||||||||||||| |||||| ||| ||  | | | ||||||||||| |||||  ||||||||||||| ||     
T  27498314 tcttcttttttcaacacatacgaaaatgggttttcgtttaccaggtatcatcagaaggacatcgtcttcaaaaggcgtggacatgccaaagggatatcta 27498413  T
Q  116 gcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaat 215  Q
    |||| ||||| ||||||||||||||| |  ||||||||  | || || |  || | |||||||||||| ||||| ||| |||| |||||  |||||||||    
T  27498414 gcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaat 27498513  T
Q  216 ttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttga 292  Q
    | | |||||||||||||| |||| | ||||| ||||||||  |||||||| | ||||||||||| |||||||||||||    
T  27498514 tcgaatatgatcatccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcacttctcgtttga 27498591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 286
Target Start/End: Original strand, 27486894 - 27487153
Alignment:
Q  33 acatacaagaatgggttttcgtttacctggtatcctcaaaccaag-----catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgct 127  Q
    |||||||| ||||||||| ||||||||  ||||| ||| | ||||     ||||||||||||  ||||| || ||||||||||| || ||||  || |      
T  27486894 acatacaacaatgggtttccgtttaccaagtatcatcagatcaagggcatcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgta 27486993  T
Q  128 ggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatc 227  Q
    |||||| ||||||||| |||||||||  |  | || |  |||| |||||||||||||||||||||| |||| |||||| | |||||||||| ||||||||    
T  27486994 ggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatc 27487093  T
Q  228 atccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 286  Q
    |||||| |||| | || || |||||||| | ||||||| |||||||||||||||||||||    
T  27487094 atccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctc 27487153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 294
Target Start/End: Complemental strand, 27514004 - 27513738
Alignment:
Q  34 catacaagaatgggttttcgtttacctggtatcctcaaaccaag-----catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctg 128  Q
    ||||||| ||||||||||||||||||  ||||| ||| | ||||     ||||||||||||  || || |||||||| ||||| || ||||  ||||  |    
T  27514004 catacaacaatgggttttcgtttaccaagtatcatcagatcaagggtatcatcttcaaaagctgttgacgtgccaaaaggatatctagcagtgtatgtag 27513905  T
Q  129 gagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatca 228  Q
    ||||| ||||||||| |||||||||  |||| || |  || | |||| | ||||| ||||||||| |||| |||||| | ||||||| || |||||||||    
T  27513904 gagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatgatca 27513805  T
Q  229 tccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttgaat 294  Q
    ||||| |||| | ||||| |||||||| |||||||| || ||||||||||| |||||||| ||||||    
T  27513804 tccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaat 27513738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 286
Target Start/End: Original strand, 27479812 - 27480071
Alignment:
Q  33 acatacaagaatgggttttcgtttacctggtatcctcaaaccaag-----catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgct 127  Q
    |||||||| ||||||||||||||||||  ||||| ||| | ||||     |||||||||||||  |||| |||||||| || || || |||| ||| |      
T  27479812 acatacaacaatgggttttcgtttaccaagtatcatcagatcaagggcatcatcttcaaaaggtttggacgtgccaaaaggctatctagcagtatacgta 27479911  T
Q  128 ggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatc 227  Q
    |||||| |||||||||  ||||||||  |  | || |  || | |||| |||| || ||| | ||| |||| |||||| |||||||||||| ||||||||    
T  27479912 ggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatc 27480011  T
Q  228 atccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 286  Q
    |||||| |||| | ||||| |||||||| ||||||||| ||||||||||||||| |||||    
T  27480012 atccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaattctc 27480071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 27473960 - 27474070
Alignment:
Q  185 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattactt 283  Q
    |||||||||||||  |||  | |||||||||||| |||||||||||||| |||| | ||||| ||||||||  ||||||||||||||||||| || ||||    
T  27473960 caagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcactt 27474059  T
Q  284 ctcgtttgaat 294  Q
    |||| ||||||    
T  27474060 ctcgcttgaat 27474070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 27502207 - 27502113
Alignment:
Q  185 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatat 278  Q
    ||||||||| |||| |||||| |||||||||||| |||||||||||||| |||| | || || |||||||| ||||||||| |||||||||||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatat 27502113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 278
Target Start/End: Complemental strand, 27505931 - 27505680
Alignment:
Q  33 acatacaagaatgggttttcgtttacctggtatcctcaaaccaag-----catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgct 127  Q
    |||||||| ||||||||||||||||||  ||||| ||| | |||      |||||||||||||  |||| ||||||||||| || || ||||  || |      
T  27505931 acatacaacaatgggttttcgtttaccaagtatcatcagatcaaaggcatcatcttcaaaaggtttggaggtgccaaaggggtatctagcagtgtacgta 27505832  T
Q  128 ggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatc 227  Q
    |||||| ||||||||| |||||||||  |  | || |  || | |||| | || || ||||||||| |||| |||||| |||||||||||| |||||| |    
T  27505831 ggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaatatgacc 27505732  T
Q  228 atccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatat 278  Q
    |||||| |||| | ||||| |||||||| ||||||||  |||||||||||||    
T  27505731 atccaatgggtggtctcactattccttgcagagaagagattttcttagatat 27505680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 292
Target Start/End: Complemental strand, 27503032 - 27502771
Alignment:
Q  31 agacatacaagaatgggttttcgtttacctggtatcctcaaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctgga 130  Q
    |||||||||||||||||||||| |||||| ||||||   |   ||  |||||||||||||  ||||||||||||| ||||| ||||| |  ||||  |||    
T  27503032 agacatacaagaatgggttttcatttaccaggtatcaaaaggtcat-catcttcaaaaggcttggatgtgccaaaaggatatcttgccgtttatgtagga 27502934  T
Q  131 gaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatc 230  Q
    ||| | ||||||| |||||||||  |||| || |  || |  ||| | || |||||||| |||||||  ||||||  |||| ||||||||||||| ||||    
T  27502933 gagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatc 27502834  T
Q  231 caacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttga 292  Q
    ||| |||| | || || |||||||||  ||||||  ||||| ||||||| |||||||| ||||    
T  27502833 caatgggtggtcttactattccttgtgaagaagattttttcgtagatatcacttctcgcttga 27502771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 27570225 - 27570075
Alignment:
Q  81 cttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatc 180  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||| ||||||| ||  || || || ||||||  |  | || |  ||||||||||| ||    
T  27570225 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttc 27570126  T
Q  181 gtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 231  Q
     |||||||| ||||||| ||||||| ||||| | || ||||||||||||||    
T  27570125 atttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcc 27570075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 27516681 - 27516580
Alignment:
Q  185 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattactt 283  Q
    ||||||||| |||| |||||| |||||||||||| |||||| ||||||| |||  | ||||| |||||||| | |||||| |||||||||||||| ||||    
T  27516681 caagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcactt 27516582  T
Q  284 ct 285  Q
    ||    
T  27516581 ct 27516580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 27466911 - 27466999
Alignment:
Q  207 aggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttgaat 294  Q
    |||||||||||| |||||||||||||| |||| | ||||| |||||||| |||||||| ||||||||||| || |||||| | ||||||    
T  27466911 aggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaat 27466999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 27567310 - 27567414
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttc 270  Q
    ||||||||||||||||||||| || |||||| |  | ||| ||||||| ||||||||||||| |||| | |||||||||||||| || ||||| | ||||    
T  27567310 ccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttc 27567409  T
Q  271 ttaga 275  Q
    |||||    
T  27567410 ttaga 27567414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 27411541 - 27411458
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 254  Q
    ||||||||||||||||||||| || ||||||||  | ||| ||||||||||||||||||| | |||| | ||||||||||||||    
T  27411541 ccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 27411458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 27460546 - 27460640
Alignment:
Q  185 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatat 278  Q
    |||||||||||||  |||  | |||||||||||| |||||||||||||| |||| | ||||| |||||||| ||||||||| ||||||| |||||    
T  27460546 caagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatat 27460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 286
Target Start/End: Original strand, 27476601 - 27476857
Alignment:
Q  33 acatacaagaatgggttttcgtttacctggtatcctcaaaccaag--catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctgga 130  Q
    |||||||| ||||||||| ||||||||| ||||| |||||   |   |||||||||||   ||||| || ||||||||||| || ||||  |||| |||     
T  27476601 acatacaacaatgggtttccgtttacctagtatcatcaaaaggacatcatcttcaaaaaccgtggacgttccaaagggatatctagcagtgtatgttggt 27476700  T
Q  131 gaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatc 230  Q
    ||| ||||||||| |||||||||  |  | || |  || | |||| | || || |||||| ||||||  |||  | |||||||||||| |||||||||||    
T  27476701 gagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaaagtgaggaacaatttgaatatgatcatc 27476800  T
Q  231 caacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 286  Q
    ||| |||| | || || |||||||| ||||||||| ||||||| |||||||| ||||    
T  27476801 caatgggtggtctaactattccttgcagagaagacattttcttggatattacctctc 27476857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 27571676 - 27571761
Alignment:
Q  170 agccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 254  Q
    ||||| ||||||||||||||||| || |||||| |  | ||| ||||||||||||||||||||| |||| | ||||||||||||||    
T  27571676 agccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttg 27571761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 27523453 - 27523373
Alignment:
Q  207 aggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 286  Q
    |||||||||||| |||||| ||||||| |||| | || || |||||||| | ||||||| |||||||||||||||||||||    
T  27523453 aggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctc 27523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 27527211 - 27527275
Alignment:
Q  167 ttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 231  Q
    |||| |||||||||||||| ||| ||||||| ||||||| ||||| | |||||||||||||||||    
T  27527211 ttaaaccaaccatcgtttctagagttgctgagtcaagctgaggaagagtttggatatgatcatcc 27527275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 27508038 - 27507953
Alignment:
Q  31 agacatacaagaatgggttttcgtttacctggtatcctcaaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgc 117  Q
    |||||||||||||||||||||| |||||||||||| |  ||    | |||||||||||||  ||||| |||||||||||||||||||    
T  27508038 agacatacaagaatgggttttcatttacctggtat-cagaagggcatcatcttcaaaaggcttggatatgccaaagggataccttgc 27507953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 27508907 - 27508973
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggt 238  Q
    |||||| || |||||||| ||| ||||||| ||| ||||| | ||||||||||||||||||||||||    
T  27508907 ccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggt 27508973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 27524579 - 27524645
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggt 238  Q
    |||||| || |||||||| ||| ||||||||||| ||||| | ||||||||||||||||||| ||||    
T  27524579 ccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggt 27524645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 27415676 - 27415733
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcat 229  Q
    |||||||||||||||||| ||| ||| ||||||| ||||| | |||||||||||||||    
T  27415676 ccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcat 27415733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 27419158 - 27419073
Alignment:
Q  170 agccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 254  Q
    ||||| ||||||||||||||||| || |||||| |  | ||| ||||||||||||||||||||| |||| | || |||||||||||    
T  27419158 agccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttg 27419073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 27490017 - 27490081
Alignment:
Q  174 aaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggt 238  Q
    ||||||| |||||||| ||| ||||||||||  ||||| | ||||||||||||||||||| ||||    
T  27490017 aaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggt 27490081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 27506748 - 27506812
Alignment:
Q  167 ttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 231  Q
    |||| |||||||| |||||||||||||||  |||||||  | ||| |||||||||||||||||||    
T  27506748 ttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcc 27506812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 27507857 - 27507777
Alignment:
Q  213 aatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttga 292  Q
    ||||||||||||| ||||||| |||| | || ||||||||||||  ||||||  ||||||||||||| |||||||| ||||    
T  27507857 aatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttga 27507777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 27478968 - 27478909
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 231  Q
    |||||||| |||||||||||||||  |||||||  | ||| |||||||||||||||||||    
T  27478968 ccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcc 27478909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 27486028 - 27485969
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 231  Q
    |||||||| |||||||||||||||  |||||||  | ||| |||||||||||||||||||    
T  27486028 ccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcc 27485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 27500410 - 27500319
Alignment:
Q  185 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttaga 275  Q
    |||||||||||||  ||| || | ||||| || |||||||| ||||||| |||| || |||| |||||||| ||||||||| ||||||||||    
T  27500410 caagaattgctgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgcagagaagaccttttcttaga 27500319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 27563431 - 27563348
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 254  Q
    |||| ||| ||||||||| ||||||| ||||||  | ||| | ||||||||||||||||||| |||| | ||||||||||||||    
T  27563431 ccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttg 27563348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 27424599 - 27424533
Alignment:
Q  172 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggt 238  Q
    |||||| || |||||||||||||| |||||| || | ||| ||| ||||||||||||||||| ||||    
T  27424599 ccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggt 27424533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 17970278 - 17970335
Alignment:
Q  96 atgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgat 153  Q
    |||||||||||||||| ||||| |  || | ||||||||||||||||| |||||||||    
T  17970278 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgat 17970335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 27497412 - 27497348
Alignment:
Q  167 ttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 231  Q
    |||| |||||||| ||||||| | ||| ||| ||||||| ||||| | |||||||||||||||||    
T  27497412 ttaaaccaaccattgtttcaatatttgttgagtcaagctgaggaagagtttggatatgatcatcc 27497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 27516861 - 27516796
Alignment:
Q  5 ttttacaccaatatcttcttttcgcaagacatacaagaatgggttttcgtttacctggtatcctcaaa 72  Q
    ||||| |||||| |||| |||||  || |||||||| ||||||||||||||||||| ||||| |||||    
T  27516861 ttttagaccaatctcttattttc--aacacatacaacaatgggttttcgtttacctagtatcatcaaa 27516796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 1754488 - 1754206
Alignment:
Q  12 ccaatatcttcttttcgcaagacatacaagaatgggttttcgtttacctggtatcctcaaa--ccaagcatcttcaaaaggagtggatgtgccaaaggga 109  Q
    ||||||||||||||||   |||||||||| ||||||||||||||||||| ||||| |||||     | ||||  ||||||| ||||| | |||||| |||    
T  1754488 ccaatatcttcttttcatcagacatacaacaatgggttttcgtttacctagtatcatcaaaaggacatcatccccaaaaggcgtggacgagccaaaagga 1754389  T
Q  110 taccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttagg 209  Q
    || || || | ||||| |||||| |||||||||| |||||||||  |  | || |  || | |||| | || |||||| ||||||| ||  || || |||    
T  1754388 tatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgagg 1754289  T
Q  210 aacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttga 292  Q
    |||| |||| |||||||||||| | |||| | ||||| ||||||||||||||| || ||||||||||||| |||||||| ||||    
T  1754288 aacagtttgaatatgatcatccgatgggtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 1759335 - 1759422
Alignment:
Q  200 caagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 286  Q
    |||||| |||||||||||| |||  | ||||||| |||| | ||||| |||| ||| |||||||| |||||||||||||| |||||||    
T  1759335 caagctgaggaacaatttgaatacaaccatccaatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctc 1759422  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 1756919 - 1756786
Alignment:
Q  95 gatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgc 194  Q
    ||||| |||||||| || |||||||   ||| ||||||| ||  ||||| |||||||||  |||| || |  || | |||||||||||||||| | |||     
T  1756919 gatgtaccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgt 1756820  T
Q  195 tgaatcaagcttaggaacaatttggatatgatca 228  Q
    ||| ||||||| | ||| ||||||||||||||||    
T  1756819 tgagtcaagctgaagaagaatttggatatgatca 1756786  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 287
Target Start/End: Original strand, 55084765 - 55084957
Alignment:
Q  96 atgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgct 195  Q
    |||||||||| || |  |||||||  |||| ||||||| ||||||||| |||||||||  | || ||||  || | ||||||||| |||||||| ||| |    
T  55084765 atgtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgtt 55084864  T
Q  196 gaatcaagcttaggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatattacttctcg 287  Q
    || ||  ||  ||||| |||||||||| |||||||||| |||| || ||||||||||||| | |||||| ||||||||  |||||||||||||    
T  55084865 gagtcgggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcg 55084957  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 287
Target Start/End: Complemental strand, 38025059 - 38024844
Alignment:
Q  73 ccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagc 172  Q
    ||||||||| |||||||  ||| |||| |||||||| || ||||||| ||||| ||||||| ||||||||| |||||| ||  | || || |  || | |    
T  38025059 ccaagcatcatcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaac 38024960  T
Q  173 caaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttct 271  Q
    ||| | || |||||| | ||  ||| ||||||  ||||| |||||||||||||||| |||| |||| | ||||| |||||||| | ||||||| |||||     
T  38024959 caagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttca 38024860  T
Q  272 tagatattacttctcg 287  Q
    | || |||||||||||    
T  38024859 tggaaattacttctcg 38024844  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 287
Target Start/End: Complemental strand, 38031511 - 38031296
Alignment:
Q  73 ccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagc 172  Q
    ||||||||| |||||||  ||| |||| |||||||| || ||||||| ||||| ||||||| ||||||||| |||||| ||  | || || |  || | |    
T  38031511 ccaagcatcatcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaac 38031412  T
Q  173 caaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttct 271  Q
    ||| | || |||||| | ||  ||| ||||||  ||||| |||||||||||||||| |||| |||| | ||||| |||||||| | ||||||| |||||     
T  38031411 caagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttca 38031312  T
Q  272 tagatattacttctcg 287  Q
    | || |||||||||||    
T  38031311 tggaaattacttctcg 38031296  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 38028816 - 38028736
Alignment:
Q  207 aggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatattacttctc 286  Q
    ||||| ||||||||||||| ||||||| |||  || ||||||||||||| | |||||||||||||||  ||||||||||||    
T  38028816 aggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 38028736  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 38043965 - 38044041
Alignment:
Q  179 tcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 254  Q
    ||||||||||| ||||||| ||||||  ||||| ||||||||||||||||||||| |||  | ||||||||||||||    
T  38043965 tcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcacaattccttg 38044041  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 287
Target Start/End: Original strand, 50910025 - 50910131
Alignment:
Q  182 tttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatatta 280  Q
    |||||| | ||| |||||||||   ||||| ||||||||||||||||||||| |||| | |||||||||||||| | |||||| || |||||  | ||||    
T  50910025 tttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaatta 50910124  T
Q  281 cttctcg 287  Q
    |||||||    
T  50910125 cttctcg 50910131  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 38040131 - 38040051
Alignment:
Q  207 aggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatattacttctc 286  Q
    ||||| |||| |||||||| ||||||| |||  || ||||||||||||| | |||||||||||||||  ||||||||||||    
T  38040131 aggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 38040051  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 48840756 - 48840696
Alignment:
Q  213 aatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttctt 272  Q
    ||||||||||||||||||||| |||| | |||||||||||||| | |||||| ||||||||    
T  48840756 aatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctt 48840696  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 287
Target Start/End: Complemental strand, 50904953 - 50904761
Alignment:
Q  96 atgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgct 195  Q
    |||||||||||||||| |||||||  || | |||||| |||||||||| |||||||||    || || |  || | |||| | || |||||||| ||| |    
T  50904953 atgtgccaaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgtt 50904854  T
Q  196 gaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcg 287  Q
    || || |||  ||||  |||| |||||||||||||||| |||| | ||||| |||||||| |||||||| ||||| ||  |||| ||||||||    
T  50904853 gagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctcg 50904761  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 38036868 - 38036763
Alignment:
Q  182 tttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatatta 280  Q
    |||||| | ||| ||| ||||||  ||||| |||| |||||||| ||||||| |||  || ||||||||||||| | |||| ||||||||||  ||||||    
T  38036868 tttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatatta 38036769  T
Q  281 cttctc 286  Q
    ||||||    
T  38036768 cttctc 38036763  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 21634605 - 21634699
Alignment:
Q  179 tcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttctt 272  Q
    ||||||||||| ||||||| ||||||  ||||| |||||||||||||||||| || |||  || ||||||||||||| |  ||||| ||||||||    
T  21634605 tcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttctt 21634699  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 21607480 - 21607403
Alignment:
Q  73 ccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgt 150  Q
    ||||||||| |||||||  ||| |||| ||||||||||| ||||| | ||||| ||||||| ||||||||| ||||||    
T  21607480 ccaagcatcatcaaaagttgtgaatgtaccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgt 21607403  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 21604804 - 21604724
Alignment:
Q  207 aggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatattacttctc 286  Q
    ||||| |||| |||||||| ||||||| |||  || ||||||||||||| | |||||||||||||||  ||||||||||||    
T  21604804 aggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 21604724  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 3073548 - 3073605
Alignment:
Q  96 atgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgat 153  Q
    |||||||||||||||| ||||| |  || | ||||||||||||||||| |||||||||    
T  3073548 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgat 3073605  T

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