View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_65 (Length: 303)
Name: NF11703_low_65
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 1415265 - 1415529
Alignment:
| Q |
25 |
tatgtcattactacaatacaaccccaaaatttgtttgaatttcttacagacatatatttgccctattttctcaaccaattctttgttaatcatatctgat |
124 |
Q |
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| T |
1415265 |
tatgtcattactacaatacagccccagagtttgtttgaatttcttacaaacatatatttgccctattttctcaaccaattctttgttaatcatatctgat |
1415364 |
T |
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| Q |
125 |
ttttccttcttgacaatactaagtactaatttgacaaataaatgcgacccatattcatttatctttttaagatatacttttctacaaactcaaagttttg |
224 |
Q |
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| T |
1415365 |
ttttccttcttgacaatactaaatactaatttgacaaataaatgtgacccgtattcatttatctttttaagatatacttttctacaaacgcaaagttttg |
1415464 |
T |
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| Q |
225 |
acacgcaaaaaatggaatgtcaaagggagtgacctgacagtcatgttaatttatctttttgtccct |
290 |
Q |
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| T |
1415465 |
acacgcaaagaatggaatgtc-aagggagtgacctgacagtcatgctaatttatctttttgtccct |
1415529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 283
Target Start/End: Original strand, 1421681 - 1421884
Alignment:
| Q |
78 |
atatttgccctattttctcaaccaattctttgttaatcatatctgatttttccttcttgacaatactaagtactaatttgacaaataaatgcgacccata |
177 |
Q |
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| T |
1421681 |
atatttgccctatcttcttaaccaattctttgttaataatatctgatttttccttcttgacaatactaagcactaatatgtcaaataattgcgacccata |
1421780 |
T |
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| Q |
178 |
ttcatttatctttttaagatatacttttct-acaaactcaaagttttgacacgcaaaaaatggaatgtcaaagggagtgacctgacagtcatgttaattt |
276 |
Q |
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| T |
1421781 |
ttca--tatctttttaagatatacttttctaacaaactgaaagttttcacacgtaaagaagggaatgtc-aaggatgtgacgtgacagtcagactaattt |
1421877 |
T |
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| Q |
277 |
atctttt |
283 |
Q |
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| T |
1421878 |
atctttt |
1421884 |
T |
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