View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11703_low_7 (Length: 690)

Name: NF11703_low_7
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11703_low_7
NF11703_low_7
[»] chr4 (7 HSPs)
chr4 (1-266)||(50062921-50063185)
chr4 (268-611)||(50063243-50063557)
chr4 (279-464)||(50024398-50024582)
chr4 (279-464)||(50031516-50031700)
chr4 (454-655)||(50063407-50063588)
chr4 (519-592)||(50024870-50024940)
chr4 (519-592)||(50031988-50032058)
[»] chr8 (6 HSPs)
chr8 (268-483)||(44142580-44142795)
chr8 (1-266)||(44142269-44142522)
chr8 (279-464)||(44121738-44121924)
chr8 (517-592)||(44142982-44143057)
chr8 (519-592)||(44122221-44122291)
chr8 (590-644)||(44143156-44143210)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 50062921 - 50063185
Alignment:
Q  1 gataagggtaaggagaaaaaggtaggaaatggggtgaattatgaagtgtagacgtctccctgagggatcagtggtgagtgaactgtgaagaattaaacaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  50062921 gataagggtaaggagaaaaaggttggaaatggggtgaattatgaagtgtggacgtcaccctgagggatcagtggtgagtgaactatgaagaattaaacaa 50063020  T
Q  101 aaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagaaagaaaataaactaataaaactatgttcagagtaaatgaaatttgcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50063021 aaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagtaaatgaaatttgcac 50063120  T
Q  201 ccagnnnnnnnngtggagctatgggaaattctttacagccctaataaaaccataaatccaagttct 266  Q
    ||||        |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50063121 ccagaaaacaaagtggagctat-ggaaattctttacagccctaataaaaccataaatccaagttct 50063185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 268 - 611
Target Start/End: Original strand, 50063243 - 50063557
Alignment:
Q  268 tacattagattataaactaaccattatataagatagcatttttggtgatgtcaaagaaagacggtgtattattagattcaattggattctatatttgtaa 367  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50063243 tacattacattataaactaaccattatataagataacatttttggtgatgtcaaagaaagacggtgtattattagattcaattggattctatatttgtaa 50063342  T
Q  368 gattgattagactgccataacttctcatcaaacaaaaagctgtgactgcaggtcccctgtctcattcatatgttcatgccatgcgtttttatattaggct 467  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||                      |||||||||||||    
T  50063343 gatatattagactgccataacttctcatcaaacaaaaagctgtgactgcaggtcccctgtctaat----------------------tttatattaggct 50063420  T
Q  468 ttttaaataatagattnnnnnnnnggtgatggcatgtatatcaatcaatagtagtaacttgcaagtgaatttcacttgcccaagatcatcatcataacat 567  Q
    ||||||||||||||||        ||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50063421 ttttaaataatagattaaaaaaaaggtcatggcatgtatatcaa-------tagtaacttgcaagtgaatttcacttgcccaagatcatcatcataacat 50063513  T
Q  568 gttatatgtcctgaagtttgagtattctatgggtgttgtagcaa 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  50063514 gttatatgtcctgaagtttgagtattctatgggtgttgtagcaa 50063557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 279 - 464
Target Start/End: Original strand, 50024398 - 50024582
Alignment:
Q  279 ataaactaaccattatataagatagcatttttggtgatgtcaaagaaagacg--gtgtattattagattcaattggattctatatttgtaagattgatta 376  Q
    ||||||||||||||| || |||||||||||| | |||||||||||| || |   |||||||| || | ||||||||||||||||||||||||||||||||    
T  50024398 ataaactaaccattaaattagatagcattttcg-tgatgtcaaagagagccatagtgtattactatagtcaattggattctatatttgtaagattgatta 50024496  T
Q  377 gactgccataacttctcatcaaacaaaaagctgtgactgcaggtcccctgtctcattcatatgttcatgccatgcgtttttatattag 464  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  50024497 gactaccataatttctcatcaaacaaaaagttgtgactgcaggtccc--gtctcattcatatcttcatgccatgcgtttttatattag 50024582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 279 - 464
Target Start/End: Original strand, 50031516 - 50031700
Alignment:
Q  279 ataaactaaccattatataagatagcatttttggtgatgtcaaagaaagacg--gtgtattattagattcaattggattctatatttgtaagattgatta 376  Q
    ||||||||||||||| || |||||||||||| | |||||||||||| || |   |||||||| || | ||||||||||||||||||||||||||||||||    
T  50031516 ataaactaaccattaaattagatagcattttcg-tgatgtcaaagagagccatagtgtattactatagtcaattggattctatatttgtaagattgatta 50031614  T
Q  377 gactgccataacttctcatcaaacaaaaagctgtgactgcaggtcccctgtctcattcatatgttcatgccatgcgtttttatattag 464  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  50031615 gactaccataatttctcatcaaacaaaaagttgtgactgcaggtccc--gtctcattcatatcttcatgccatgcgtttttatattag 50031700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 454 - 655
Target Start/End: Original strand, 50063407 - 50063588
Alignment:
Q  454 ttttatattaggctttttaaataatagattnnnnnnnnggtgatggcatgtatatcaatcaatagtagtaacttgcaagtgaatttcacttgcccaagat 553  Q
    ||||||||||||||||||||||||||||||        ||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  50063407 ttttatattaggctttttaaataatagattaaaaaaaaggtcatggcatgtatatcaat-------agtaacttgcaagtgaatttcacttgcccaagat 50063499  T
Q  554 catcatcataacatgttatatgtcctgaagtttgagtattctatgggtgttgtagcaatggcgaatgctaaacaaaaggaactaatcattcatggcatcc 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||    
T  50063500 catcatcataacatgttatatgtcctgaagtttgagtattctatgggtgttgtagcaa-------------acaaaaggaactaatcattcatggcatcc 50063586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 519 - 592
Target Start/End: Original strand, 50024870 - 50024940
Alignment:
Q  519 tagtaacttgcaagtgaatttcacttgcccaagatcatcatcataacatgttatatgtcctgaagtttgagtat 592  Q
    |||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||| |||||||||||||    
T  50024870 tagtaacttgcaagtgaatttcacttgcccaag---atcatcattacatgttatatgtccagaagtttgagtat 50024940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 519 - 592
Target Start/End: Original strand, 50031988 - 50032058
Alignment:
Q  519 tagtaacttgcaagtgaatttcacttgcccaagatcatcatcataacatgttatatgtcctgaagtttgagtat 592  Q
    |||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||| |||||||||||||    
T  50031988 tagtaacttgcaagtgaatttcacttgcccaag---atcatcattacatgttatatgtccagaagtttgagtat 50032058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 268 - 483
Target Start/End: Original strand, 44142580 - 44142795
Alignment:
Q  268 tacattagattataaactaaccattatataagatagcatttttggtgatgtcaaagaaagacggtgtattattagattcaattggattctatatttgtaa 367  Q
    ||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44142580 tacattacataataaactaaccattatataagatagcatttttcgtgatgtcaaagaaagacggtgtattattagattcaattggattctatatttgtaa 44142679  T
Q  368 gattgattagactgccataacttctcatcaaacaaaaagctgtgactgcaggtcccctgtctcattcatatgttcatgccatgcgtttttatattaggct 467  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44142680 gatttattagactgccataacttctcatcaaacaaaaagctgtgactgcaggtcccctgtctcattcatatgttcatgccatgcgtttttatattaggct 44142779  T
Q  468 ttttaaataatagatt 483  Q
    ||||||||||||||||    
T  44142780 ttttaaataatagatt 44142795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 44142269 - 44142522
Alignment:
Q  1 gataagggtaaggagaaaaaggtaggaaatggggtgaattatgaagtgtagacgtctccctgagggatcagtggtgagtgaactgtgaagaattaaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||    
T  44142269 gataagggtaaggagaaaaaggtaggaaatggggtgaattatg-----------tctccctgagggatcagtggtgagtgaactgtgaagaattaaacaa 44142357  T
Q  101 aaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagaaagaaaataaactaataaaactatgttcagagtaaatgaaatttgcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  44142358 aaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaaccatgttcagagtaaatgaaatttgcac 44142457  T
Q  201 ccagnnnnnnnngtggagctatgggaaattctttacagccctaataaaaccataaatccaagttct 266  Q
    ||||        |||||||||| | |||||||||| ||||||||||||||||||||||||||||||    
T  44142458 ccagaaaacaaagtggagctat-gtaaattctttatagccctaataaaaccataaatccaagttct 44142522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 279 - 464
Target Start/End: Original strand, 44121738 - 44121924
Alignment:
Q  279 ataaactaaccattatataagatagcatttttggtgatgtcaaagaaagacg--gtgtattattagattcaattggattctatatttgtaagattgatta 376  Q
    ||||||||||||||| || |||||||||||| | |||||||||||| || |   |||||||| || | ||||||||||||||||||||||||||||||||    
T  44121738 ataaactaaccattaaattagatagcattttcg-tgatgtcaaagagagccatagtgtattactatagtcaattggattctatatttgtaagattgatta 44121836  T
Q  377 gactgccataacttctcatcaaacaaaaagctgtgactgcaggtcccctgtctcattcatatgttcatgccatgcgtttttatattag 464  Q
    |||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44121837 gactaccataatttcttatcaaacaaaaagttgtgactgcaggtcccctgtctcattcatatcttcatgccatgcgtttttatattag 44121924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 517 - 592
Target Start/End: Original strand, 44142982 - 44143057
Alignment:
Q  517 agtagtaacttgcaagtgaatttcacttgcccaagatcatcatcataacatgttatatgtcctgaagtttgagtat 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44142982 agtagtaacttgcaagtgaatttcacttgcccaagatcatcatcataacatgttatatgtcctgaagtttgagtat 44143057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 519 - 592
Target Start/End: Original strand, 44122221 - 44122291
Alignment:
Q  519 tagtaacttgcaagtgaatttcacttgcccaagatcatcatcataacatgttatatgtcctgaagtttgagtat 592  Q
    |||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||| |||||||||||||    
T  44122221 tagtaacttgcaagtgaatttcacttgcccaag---atcatcattacatgttatatgtccagaagtttgagtat 44122291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 590 - 644
Target Start/End: Original strand, 44143156 - 44143210
Alignment:
Q  590 tattctatgggtgttgtagcaatggcgaatgctaaacaaaaggaactaatcattc 644  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44143156 tattctatgggtgttgtagcaatggcgactgctaaacaaaaggaactaatcattc 44143210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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