View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_70 (Length: 292)
Name: NF11703_low_70
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 28606805 - 28606534
Alignment:
| Q |
5 |
atataaagagagttggtatatcatgggtaaagtcagaaacttattttgatttcataaaggatgcattgaaacaattggttgaatgtagaagagttctcaa |
104 |
Q |
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| T |
28606805 |
atataaagagagttggtatatcatgggtaaagtcagaaacttattttgatttcataaaggatgcattgaaacaattggttgaatgtagaagagttctcaa |
28606706 |
T |
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| Q |
105 |
atgggcttatgtatatggatactatcttcctgagaatgaaaatgctaagattgagttttttgagcacatagaaagcatagctcaggttgctttcgagcgc |
204 |
Q |
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| T |
28606705 |
atgggcttatgtatatggatactatcttcctgagaatgaaaatgctaagattgagttttttgagcacatagaaagcatagctcaggttgctttggagcgc |
28606606 |
T |
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| Q |
205 |
cttcgtcgttgtgcagaaagtgaattaagaaaggttctaaatgatgggtcagaggaagaatttcgtgatttt |
276 |
Q |
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| T |
28606605 |
cttcgtcattgtgcagaaagtgaattaagaaaggttctaaacgatgggtcagaggaagaattttgtgatttt |
28606534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 59 - 276
Target Start/End: Complemental strand, 28603562 - 28603342
Alignment:
| Q |
59 |
taaaggatgcattgaaacaattggttgaatgtagaagagttctcaaatgggcttatgtatatggatactatcttcctgagaatgaaaatgctaagattga |
158 |
Q |
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| T |
28603562 |
taaaggatgcattgaaacacatagttgaatgcagaagaattctcagatggagttatgtatatggatactatcttcccgaggatgaaaatgctaagattga |
28603463 |
T |
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| Q |
159 |
gttttttgagcacatagaaagcatagctcaggttgctttcgagcgccttcgtcgttgtgcagaaagtgaattaagaaag---gttctaaatgatgggtca |
255 |
Q |
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| T |
28603462 |
gttttttgatcacatccaaagcatagctcaagttgttttggataggcttcatcattttgcagaaaatggattaagaaagcaacttctacataatgggtcc |
28603363 |
T |
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| Q |
256 |
gaggaagaatttcgtgatttt |
276 |
Q |
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| T |
28603362 |
gaggaagaattttgtgatttt |
28603342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 28602220 - 28602114
Alignment:
| Q |
61 |
aaggatgcattgaaacaattggttgaatgtagaagagttctcaaatgggcttatgtatatggatactatcttcctgagaatgaaaatgctaagattgagt |
160 |
Q |
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| T |
28602220 |
aaggatgcatggaaacaggtaattgaatgtcgaagagttatgagatggagttatgtatatgaatactatcttcccgaggatgaaaatgctaagattgagt |
28602121 |
T |
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| Q |
161 |
tttttga |
167 |
Q |
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| T |
28602120 |
tttttga |
28602114 |
T |
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