View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_74 (Length: 279)
Name: NF11703_low_74
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_74 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 17593818 - 17593992
Alignment:
| Q |
8 |
aagcagagattgaagcatcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagta |
107 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
17593818 |
aagcagacattgaagcatcactaccttcagaatcatacctacatactaaataacaaa-cataaatacgattaacataaacatatcaaaacaatagtagta |
17593916 |
T |
|
| Q |
108 |
tcatatatatatttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
185 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17593917 |
tcatat--atatttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
17593992 |
T |
|
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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 43313846 - 43314020
Alignment:
| Q |
8 |
aagcagagattgaagcatcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagta |
107 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
43313846 |
aagcagacattgaagcatcactaccttcagaatcatacctacatactaaataacaaa-cataaatacgattaacataaacatatcaaaacaatagtagta |
43313944 |
T |
|
| Q |
108 |
tcatatatatatttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
185 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43313945 |
tcatat--atatttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
43314020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 34743484 - 34743310
Alignment:
| Q |
8 |
aagcagagattgaagcatcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagta |
107 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
34743484 |
aagcagacattgaagcatcactaccttcagaatcatacctacatactaaataacaaa-cataaatacgattaacataaacatatcaaaacaatagtagta |
34743386 |
T |
|
| Q |
108 |
tcatatatatatttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
185 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34743385 |
tcatatatat--ttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
34743310 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 45551066 - 45550982
Alignment:
| Q |
16 |
attgaagcatcattaccatcagaatcatacctacataccaaataacaaa-acatagatacgattaacataaacataccaaaacaa |
99 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| || |||||||| ||| | ||| ||| |||||||||||||||| || ||||| |
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| T |
45551066 |
attgcagcatccttaccttcagaatcatacctgcagcccaaataataaacatataaatatgattaacataaacatatcataacaa |
45550982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 21531295 - 21531121
Alignment:
| Q |
8 |
aagcagagattgaagcatcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagta |
107 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
21531295 |
aagcagacattgaagcatcactaccttcagaatcatacctacatactaaataacaaa-cataaatacgattaacataaacatatcaaaacaatagtagta |
21531197 |
T |
|
| Q |
108 |
tcatatatatatttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
185 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21531196 |
tcatatatat--ttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
21531121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 35167236 - 35167062
Alignment:
| Q |
8 |
aagcagagattgaagcatcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagta |
107 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
35167236 |
aagcagacattgaagcatcactaccttcagaatcatacctacatactaaataacaaa-cataaatacgattaacataaacatatcaaaacaatagtagta |
35167138 |
T |
|
| Q |
108 |
tcatatatatatttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
185 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35167137 |
tcatatatat--ttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaac |
35167062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 50134836 - 50135014
Alignment:
| Q |
16 |
attgaagcatcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatat |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||| |||||||||||||| |
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| T |
50134836 |
attgaagcatcattaccttcagaatcatacctacataccaaataacaaat-ataaatatgattaacataaacatatcaaaaca---gtagtatcatatat |
50134931 |
T |
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| Q |
116 |
atatttatcagaaagtgttaacgcagttatcatgaaattaattcatttcacacatcagacataaacaaacatataatataaaatt |
200 |
Q |
| |
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| || ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
50134932 |
tttttg--cagaaagtgttaacgcagttatcctgaaatcaattcacttcacacatcagacataaaccaacatataatataaaatt |
50135014 |
T |
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