View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_75 (Length: 270)
Name: NF11703_low_75
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 39575149 - 39575391
Alignment:
| Q |
18 |
cacattcattccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctccgtggcgatttgaagg |
117 |
Q |
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| T |
39575149 |
cacattcattccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctcggtggcgatttgaagg |
39575248 |
T |
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| Q |
118 |
tcaagcaaggagattttcatgccaaggtttatgttaggaaaaggtgagccttgagttgtttttccataagttaatttgctacgagaaatccctccggcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
39575249 |
tcaagcaaggagattttcatgccaaggtttatgttaggtaaaggtgagccttgagttgtttttccataagttaatttgctatgagaaatccctcctgcag |
39575348 |
T |
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| Q |
218 |
cagttggaatcggcaacaaatcgaaactctcaacaggcctttg |
260 |
Q |
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| T |
39575349 |
cagttggaatcggcaacaaatcgaaactctcaacaggcctttg |
39575391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 39543314 - 39543542
Alignment:
| Q |
18 |
cacattcattccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctccgtggcgatttgaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39543314 |
cacattcattccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctcggtggcgatttgaagg |
39543413 |
T |
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| Q |
118 |
tcaagcaaggagattttcatgccaaggtttatgttaggaaaaggtgagccttgagttgtttttccataagttaatttgctacgagaaatccctccggcag |
217 |
Q |
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| T |
39543414 |
tcaagcaaggagattttcatgccaaggtttatgttaggtaaaggtgagccttgagttgtttttccataagttaatttgctatgagaaatctctcctgcag |
39543513 |
T |
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| Q |
218 |
cagttggaatcggcaacaaatcgaaactc |
246 |
Q |
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| T |
39543514 |
cagttggaatcggcaacaaatcgaaactc |
39543542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 39579690 - 39579927
Alignment:
| Q |
23 |
tcattccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctccgtggcgatttgaaggtcaag |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| | | |||||||||||| || |||| |||||| ||||| |
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| T |
39579690 |
tcattccattcttgagaactcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatcaag |
39579789 |
T |
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| Q |
123 |
caaggagattttcatgccaaggtttatgttaggaaaaggtgagccttgagttgtttttccataagttaatttgctacgagaaatccctccggcagcagtt |
222 |
Q |
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| T |
39579790 |
caaggagattttcaggccaaggtttatgttaggtaaaggcgagccttgagttgtttttccatatgttaatcttctaagggatatccctcctgcagcagct |
39579889 |
T |
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| Q |
223 |
ggaatcggcaacaaatcgaaactctcaacaggcctttg |
260 |
Q |
| |
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|| ||| ||| ||| || || |||| ||||||||||| |
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| T |
39579890 |
tgagtcgccaaaaaaccggaattctccacaggcctttg |
39579927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 39520519 - 39520752
Alignment:
| Q |
27 |
tccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctccgtggcgatttgaaggtcaagcaag |
126 |
Q |
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||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||| || | |||||| |||||||| |
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| T |
39520519 |
tccattcgtgaggactcccttataaacaattccaaaaccaccctttccaataatcctctttgcatcgaaattatccgttgcaaattgaagatcaagcaaa |
39520618 |
T |
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| Q |
127 |
gagattttcatgccaaggtttatgttaggaaaaggtgagccttgagttgtttttccataagttaatttgctacgagaaatccctccggcagcagttggaa |
226 |
Q |
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| T |
39520619 |
gggattttcaatccaaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaa |
39520718 |
T |
|
| Q |
227 |
tcggcaacaaatcgaaactctcaacaggcctttg |
260 |
Q |
| |
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| |||||| | ||| || |||||||||||||||| |
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| T |
39520719 |
tgggcaaccattcggaattctcaacaggcctttg |
39520752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 39510261 - 39510494
Alignment:
| Q |
27 |
tccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctccgtggcgatttgaaggtcaagcaag |
126 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| || ||||| |||| |||||| ||||||||| |
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| T |
39510261 |
tccattcctgagaactcccttataaacaattccaaaaccaccctttccaattatcctctttgcatcaaagttatccgttgcgaattgaagatcaagcaag |
39510360 |
T |
|
| Q |
127 |
gagattttcatgccaaggtttatgttaggaaaaggtgagccttgagttgtttttccataagttaatttgctacgagaaatccctccggcagcagttggaa |
226 |
Q |
| |
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| |||||||| || |||||||||||||| ||||| ||||||||| ||| | || ||| ||||||| |||| ||||| ||||||| |||| ||||| |
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| T |
39510361 |
gggattttcaatccgaggtttatgttaggtaaaggggagccttgaattgctgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaa |
39510460 |
T |
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| Q |
227 |
tcggcaacaaatcgaaactctcaacaggcctttg |
260 |
Q |
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| T |
39510461 |
ttggcaaccattcggaattttcaacaggcctttg |
39510494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 39524095 - 39524237
Alignment:
| Q |
118 |
tcaagcaaggagattttcatgccaaggtttatgttaggaaaaggtgagccttgagttgtttttccataagttaatttgctacgagaaatccctccggcag |
217 |
Q |
| |
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|||||||| | |||||||| ||||||||||||||||| ||||| ||||||||| ||||| || ||| ||||||| |||| ||||| | ||||| | |
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| T |
39524095 |
tcaagcaaagggattttcaatccaaggtttatgttaggtaaaggcgagccttgaattgttgttgcatcagttaatctgctgtgagaacttcctcctctgg |
39524194 |
T |
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| Q |
218 |
cagttggaatcggcaacaaatcgaaactctcaacaggcctttg |
260 |
Q |
| |
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||| |||||| |||||| | ||| | |||||||||||||||| |
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| T |
39524195 |
cagctggaataggcaaccattcggacttctcaacaggcctttg |
39524237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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