View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_76 (Length: 267)
Name: NF11703_low_76
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_76 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 5508254 - 5508440
Alignment:
| Q |
65 |
ggcattgaagagctaaaaacaacaagagttctacaacttgctgccatgacttctcaacaagaacaacaagaagagtcaaaaacgtttcccctcaaaatca |
164 |
Q |
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| T |
5508254 |
ggcattgaagagctaaaaacaacaagagttctacaacttgctgccatgacttctcaacaagaacaacaagaagagtcaaaaacgtttcccctcaaaatca |
5508353 |
T |
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| Q |
165 |
cggtagacaaacaaaggaacaaagttgtttttgtggaagcaacaaaagactttgttgagactcttttcagcttcctatctttgccac |
251 |
Q |
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| T |
5508354 |
cggtagacaaacaaagcaacaaagttgtttttgtggaagcaacaaaagactttgttgagactcttttcagcttcctatctttgccac |
5508440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 5437654 - 5437545
Alignment:
| Q |
135 |
aagagtcaaaaacgtttcccctcaaaatcacggtagacaaacaaaggaacaaagttgtttttgtggaagcaacaaaagactttgttgagactcttttcag |
234 |
Q |
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| T |
5437654 |
aagagtcaaaatcgattcccctcaaaatattagtggacaaacaaagaagcaaagttgtttttgtggaagcaacaaaagattttgttgacactctattcag |
5437555 |
T |
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| Q |
235 |
cttcctatct |
244 |
Q |
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| T |
5437554 |
cttcctatct |
5437545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 5458917 - 5458843
Alignment:
| Q |
170 |
gacaaacaaaggaacaaagttgtttttgtggaagcaacaaaagactttgttgagactcttttcagcttcctatct |
244 |
Q |
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| T |
5458917 |
gacaaacaaagaaacaaagttgtttttgtggaagcaacaaaggactttgttgacactatcttcagcttcctatct |
5458843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 5447892 - 5447779
Alignment:
| Q |
131 |
caagaagagtcaaaaacgtttcccctcaaaatcacggtagacaaacaaaggaacaaagttgtttttgtggaagcaacaaaagactttgttgagactcttt |
230 |
Q |
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| T |
5447892 |
caagaagagtcaagaacaattcacgtcaaaatcttggtgcataaacaaagcaacaaagttgtatttgtggaagcaaaaaaggactttgttgacactcttt |
5447793 |
T |
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| Q |
231 |
tcagcttcctatct |
244 |
Q |
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| T |
5447792 |
tcagcttcctatct |
5447779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 5487122 - 5487196
Alignment:
| Q |
170 |
gacaaacaaaggaacaaagttgtttttgtggaagcaacaaaagactttgttgagactcttttcagcttcctatct |
244 |
Q |
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| T |
5487122 |
gacaaacaaagaaacaaagttgttttcgtggaagcaacaaaagattttgttgacactctcttcagtttcctatct |
5487196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 14612 - 14686
Alignment:
| Q |
170 |
gacaaacaaaggaacaaagttgtttttgtggaagcaacaaaagactttgttgagactcttttcagcttcctatct |
244 |
Q |
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| T |
14612 |
gacaaacaaagcaacagagttgtttttgtggaagcagcaaaaatctatgttgagactcttttcagcttcctatct |
14686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 1213449 - 1213523
Alignment:
| Q |
170 |
gacaaacaaaggaacaaagttgtttttgtggaagcaacaaaagactttgttgagactcttttcagcttcctatct |
244 |
Q |
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||||||||||| |||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
1213449 |
gacaaacaaagcaacagagttgtttttgtggaagcagcaaaaatctatgttgagactcttttcagcttcctatct |
1213523 |
T |
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