View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_78 (Length: 260)
Name: NF11703_low_78
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 32015451 - 32015601
Alignment:
| Q |
11 |
tgagaagaaacatccaaagaagtcgaatctgacggagaattcgaccgccgccggaaaatctgctcctccgtgccgccgccggtgatccatttttcacgta |
110 |
Q |
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| T |
32015451 |
tgagaagaaacatccaaagaagtcgaatctgacggagaattcgaccgccgccggaaaatctgctcctccgtgccgccgccggtgatccatttttcacgca |
32015550 |
T |
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| Q |
111 |
accttttcacagaagctgtaaaaacacaacaatcacaataaaactgagaac |
161 |
Q |
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| T |
32015551 |
accttttaacagaagctgtaaaaacacaacaatcacaataaaactgagaac |
32015601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 32015661 - 32015701
Alignment:
| Q |
220 |
gcatttgaatagtaacaacctgaacgagccttccgtggaac |
260 |
Q |
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| T |
32015661 |
gcatttgaatagtaacaacctgaacgagccttccgtggaac |
32015701 |
T |
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