View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_79 (Length: 258)
Name: NF11703_low_79
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_79 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 35722754 - 35722510
Alignment:
| Q |
14 |
agaggcaaattgagtggattacagctaattgggaccctttgcttgaacttgaagcttgaaactaaaacatgacagcttcaatccaaatattgttgtttag |
113 |
Q |
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| T |
35722754 |
agaggcaaattgagtggattacagctaattgggaccctttgcttgaacttgaagct-gaaactaaaacatgacagcttcaatccaaatattgttgtttag |
35722656 |
T |
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| Q |
114 |
taagaaattacacatgcagaaaaaaccagcacaaaataattaacatgcctcatctggaaaattaacaagaacacttacttaatcatctgtatgaa-aaaa |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35722655 |
taagaaattacatatgcagaaaaaaccagcacaaaacaattaacatgcctcatctggaaaattaacaagaacacttacttaatcatctgtatgaaaaaaa |
35722556 |
T |
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| Q |
213 |
cacataaatacaccccaattaaattaaataggctaattaatcatct |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35722555 |
cacataaatacaccccaattaaattaaataggctaattaatcatct |
35722510 |
T |
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