View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_80 (Length: 257)
Name: NF11703_low_80
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 23993722 - 23993512
Alignment:
| Q |
37 |
ttttatttatctaaactcttaagaaagttcaaaatatagaagtaatcacaagagaaataggttacttggagtaggtggtgcattttcaatgacttgagga |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23993722 |
ttttatttatctaaactcttaagaaagttcaaaatatagaagtaatcacaagagaaataggttacctggagtaggtggtgcattttcaatgacttgagga |
23993623 |
T |
|
| Q |
137 |
agatcaaaattgattccctttattgatggatatttggcaataattgttttgagactttgtccactgccacctccaacatcaaccatagttgatactccct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23993622 |
agatcaaaattgattccctttattgatggatatttggcaataatagttttgagactttgtccactgccacctcctacatcaaccatagttgatactccct |
23993523 |
T |
|
| Q |
237 |
caagacctttg |
247 |
Q |
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||||||||||| |
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| T |
23993522 |
caagacctttg |
23993512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 3349054 - 3349202
Alignment:
| Q |
89 |
agaaataggttacttggagtaggtggtgcattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataattgttttga |
188 |
Q |
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|||||||| ||| |||| | |||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |||||| |
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| T |
3349054 |
agaaatagagtacctggaatgggtgatgcattttcaatcacttgaggaaggtcaaaattgattcccttaattgatggatatttttcaataatcattttga |
3349153 |
T |
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| Q |
189 |
gactttgtccactgccacctccaacatcaaccatagttgatactccctc |
237 |
Q |
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| T |
3349154 |
gagtttgtccatttccacctccaatatcaaccaaagttgatattccctc |
3349202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 3298901 - 3299023
Alignment:
| Q |
117 |
cattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataattgttttgagactttgtccactgccacctccaacatc |
216 |
Q |
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|||| ||||| ||||| ||||| |||||||||||| ||||||||||||| |||||||||||||| |||||| |||||||| |||||||||| ||||| |
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| T |
3298901 |
cattgtcaatcacttgtggaaggtcaaaattgattgcctttattgatgggtatttggcaataatcaacttgagagtttgtccattgccacctcctacatc |
3299000 |
T |
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| Q |
217 |
aaccatagttgatactccctcaa |
239 |
Q |
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||||| ||||||||| ||||||| |
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| T |
3299001 |
aaccaaagttgataccccctcaa |
3299023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 3390142 - 3390262
Alignment:
| Q |
110 |
ggtggtgcattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataattgttttgagactttgtccactgccacctc |
209 |
Q |
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|||||||||| |||||| ||||| || ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||||| |
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| T |
3390142 |
ggtggtgcatgttcaatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctc |
3390241 |
T |
|
| Q |
210 |
caacatcaaccatagttgata |
230 |
Q |
| |
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| |||||||||| ||||||| |
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| T |
3390242 |
ctacatcaaccagtgttgata |
3390262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 3403425 - 3403545
Alignment:
| Q |
110 |
ggtggtgcattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataattgttttgagactttgtccactgccacctc |
209 |
Q |
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|||||||||| |||||| ||||| || ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||||| |
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| T |
3403425 |
ggtggtgcatgttcaatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctc |
3403524 |
T |
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| Q |
210 |
caacatcaaccatagttgata |
230 |
Q |
| |
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| |||||||||| ||||||| |
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| T |
3403525 |
ctacatcaaccagtgttgata |
3403545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 3369797 - 3369905
Alignment:
| Q |
110 |
ggtggtgcattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataattgttttgagactttgtccactgccacctc |
209 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||| |||||| ||||||||||||||||||||| ||||| | |||||||||||||||| | ||||||| |
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| T |
3369797 |
ggtggtgcattttcaatcacttgtgggaggtcaaagttgattgcctttattgatggatatttggatataatggctttgagactttgtccatttccacctc |
3369896 |
T |
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| Q |
210 |
caacatcaa |
218 |
Q |
| |
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| T |
3369897 |
ctacatcaa |
3369905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 3360264 - 3360394
Alignment:
| Q |
109 |
aggtggtgcattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataattgttttgagactttgtccactgccacct |
208 |
Q |
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|
|||||||| ||||||||| ||||| ||||| |||||||||||| ||||||||||||| ||||| | ||||| ||||||||||||| || | ||||| |
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| T |
3360264 |
aggtggtgtattttcaattacttgtggaaggtcaaaattgattgcctttattgatgggtatttagagataatcattttgagactttgccctgttccacca |
3360363 |
T |
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| Q |
209 |
ccaacatcaaccatagttgatactccctcaa |
239 |
Q |
| |
|
|| |||||||||| ||||||| |||||||| |
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| T |
3360364 |
cctacatcaaccagtgttgatattccctcaa |
3360394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 20720361 - 20720475
Alignment:
| Q |
103 |
tggagtaggtggtgcattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataattgttttgagactttgtccactg |
202 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| || || |||||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||| || |
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| T |
20720361 |
tggagttggtggtgcattttcaatcacttgtggtaggtcaaaattgattgcctttattgatgggtatttggcaataatcatttagagactttgtccgttg |
20720460 |
T |
|
| Q |
203 |
ccacctccaacatca |
217 |
Q |
| |
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|| ||||| |||||| |
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| T |
20720461 |
cctcctcctacatca |
20720475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 43365238 - 43365109
Alignment:
| Q |
110 |
ggtggtgcattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataattgttttgagactttgtccactgccacctc |
209 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| || |||||||||||| |||| ||||||| || || || ||| || ||||||| ||||||| |
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| T |
43365238 |
ggtggtgcattttcaataacttggggcagatcaaagttaattccctttattaatgggtatttggatattatcaattcaagatttcgtccacttccacctc |
43365139 |
T |
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| Q |
210 |
caacatcaaccatagttgatactccctcaa |
239 |
Q |
| |
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|||||||||||| ||||||| |||||||| |
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|
| T |
43365138 |
caacatcaaccaatgttgatattccctcaa |
43365109 |
T |
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