View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11703_low_81 (Length: 256)
Name: NF11703_low_81
Description: NF11703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11703_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 13003460 - 13003683
Alignment:
| Q |
19 |
atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaa-aacaaaagttttgttagtcatatagat |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13003460 |
atttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacattctgtgaactcataaaaaaacaaaagttttgttagtcatatagat |
13003559 |
T |
|
| Q |
118 |
gataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13003560 |
gataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaaccaatcaa |
13003659 |
T |
|
| Q |
218 |
attgcacatttaatgattcctttg |
241 |
Q |
| |
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||||||||| |||||||||||||| |
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|
| T |
13003660 |
attgcacatctaatgattcctttg |
13003683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 31252126 - 31251903
Alignment:
| Q |
19 |
atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaaaa-caaaagttttgttagtcatatagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31252126 |
atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaaaaacaaaagttttgttagtcatatagat |
31252027 |
T |
|
| Q |
118 |
gataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaa |
217 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
31252026 |
gataaaccatttatatcacacaaaaataacatgtaaggatttaggacaaaaccttctttacttttacataagtcgggttttagcttcttaaaccaatcaa |
31251927 |
T |
|
| Q |
218 |
attgcacatttaatgattcctttg |
241 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
31251926 |
attgcacatttaatgattcctttg |
31251903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 31094254 - 31094472
Alignment:
| Q |
19 |
atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataa----aaaacaaaagttttgttagtcatata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| || |||| |||||||||||||||||||| |
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| T |
31094254 |
atttccaccaatctctcccactataaacaacgattttttgaagaagctatcacattctgtgaactcacaagaagaaaaaaaaagttttgttagtcatatt |
31094353 |
T |
|
| Q |
115 |
gatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaat |
214 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| || |||||||||||||| |||||||| |
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| T |
31094354 |
gatgataaatcatttatatcacacaaaaataacaagcaaggagttaggacaaaaccttctttgtttttacacaataagggttttagcttcttaaaccaat |
31094453 |
T |
|
| Q |
215 |
caaattgcacatttaatga |
233 |
Q |
| |
|
||||||||||| ||||||| |
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|
| T |
31094454 |
caaattgcacaattaatga |
31094472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 27206189 - 27205984
Alignment:
| Q |
19 |
atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataa-aaaacaaaagttttgttagtcatatagat |
117 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| || | |
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|
| T |
27206189 |
atttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacac |
27206090 |
T |
|
| Q |
118 |
gataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaa |
217 |
Q |
| |
|
|| |||| |||||| ||| ||||||||| ||||| ||| ||||||||||||||||||| ||||||| | |||||| ||||||| ||||||||||| |
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|
| T |
27206089 |
gaaaaacaatttatttcaaacaaaaatagtatgcagggagttaggacaaaaccttctttagttttacacgatgagggtttaagcttcttaaaccaatcaa |
27205990 |
T |
|
| Q |
218 |
attgca |
223 |
Q |
| |
|
|||||| |
|
|
| T |
27205989 |
attgca |
27205984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 16162847 - 16162748
Alignment:
| Q |
19 |
atttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactc--ataaaaaacaaaagttttgttagtcatataga |
116 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||||||| ||||| ||||| | || | |||||| ||||||||||||||||||||||| |
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|
| T |
16162847 |
atttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacactctgttatttcaaaaaaaaaaaaaaagttttgttagtcatataga |
16162748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25658250 - 25658207
Alignment:
| Q |
23 |
ccaccaatctctcccactataaacaatgagtttttgaagaagct |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
25658250 |
ccaccaatctctcccactataaacaatgattttttgaagtagct |
25658207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25664655 - 25664612
Alignment:
| Q |
23 |
ccaccaatctctcccactataaacaatgagtttttgaagaagct |
66 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
25664655 |
ccaccaatctctcccactataaacaatgattttttgaagtagct |
25664612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25671060 - 25671017
Alignment:
| Q |
23 |
ccaccaatctctcccactataaacaatgagtttttgaagaagct |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
25671060 |
ccaccaatctctcccactataaacaatgattttttgaagtagct |
25671017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25677465 - 25677422
Alignment:
| Q |
23 |
ccaccaatctctcccactataaacaatgagtttttgaagaagct |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
25677465 |
ccaccaatctctcccactataaacaatgattttttgaagtagct |
25677422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25684139 - 25684096
Alignment:
| Q |
23 |
ccaccaatctctcccactataaacaatgagtttttgaagaagct |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25684139 |
ccaccaatctctcccactataaacaatgattttttgaagtagct |
25684096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 27228810 - 27228714
Alignment:
| Q |
137 |
acaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaaattgcacatttaatga |
233 |
Q |
| |
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|||||||||| | ||||| | ||| |||||||||||||| |||||||| || ||||||| |||| |||||| |||||||||||||||||||| |
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| T |
27228810 |
acaaaaataatacgcaagtagttatgacaaaaccttcttcacttttacacaatgatggttttatattcttaaaccattcaaattgcacatttaatga |
27228714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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